PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082889.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 385aa    MW: 43301.4 Da    PI: 7.1481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.9e-10327382147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT+eE+e l+ +v+++ ++      W++I    +     +Rt+ ++k++w++ 
   XP_011082889.1 327 RLLWTEEEEETLKAGVQKYSTDgnknlPWTKILDFGQhkfdRTRTPSDLKDKWRNM 382
                      677*******************************999*****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.7E-9457IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.54E-9558IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002492.4E-5853IPR001965Zinc finger, PHD-type
PROSITE profilePS5129411.43322385IPR017930Myb domain
SuperFamilySSF466892.84E-10325383IPR009057Homeodomain-like
SMARTSM007179.8E-8326385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10326384IPR009057Homeodomain-like
PfamPF002491.1E-7329382IPR001005SANT/Myb domain
CDDcd116606.35E-10330383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDRSEKHLCI KCNEGGNLLV CSENGCPLAI HEGCMGCPAR FDDAGRFYCP YCLYKQAVAE  60
SRQAREYALA RKKALLIFMD EEMMGSEQHL EEIKRAEADG HDLSKVSPAN ANVTCDDGKS  120
RGKDETILNK SVLDLEHQSS SSEEEKIQEE ESDASTSSKG QEPSLKMYEK EKVRNAEGKK  180
IQEEEPETSA TSTDRDPSLK MHENKNCNPE EEQIQEEECE TSSAPSAEGP SPTVRTRTKR  240
GFKNSDQIDG DSGTVSLQRK LVKQSGKSKL TTPTVNHPRR SSRRLSSALG SAQMLNDKVV  300
ASRSLRQPRQ PLVKLANYTF SSGKRKRLLW TEEEEETLKA GVQKYSTDGN KNLPWTKILD  360
FGQHKFDRTR TPSDLKDKWR NMMAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239RTRTKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082890.10.0telomeric repeat-binding factor 1-like
RefseqXP_011082891.10.0telomeric repeat-binding factor 1-like
RefseqXP_011082892.10.0telomeric repeat-binding factor 1-like
RefseqXP_011082893.10.0telomeric repeat-binding factor 1-like
RefseqXP_020550641.10.0telomeric repeat-binding factor 1-like
RefseqXP_020550642.10.0telomeric repeat-binding factor 1-like
TrEMBLA0A2G9I7881e-113A0A2G9I788_9LAMI; DNA helicase
STRINGMigut.M00522.1.p9e-96(Erythranthe guttata)