PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081344.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 469aa    MW: 52096.7 Da    PI: 6.3595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13297342454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  XP_011081344.1 297 NHVEAERQRREKLNQRFYALRSIVPNV-----SRMDKASLLADAVTYIKEL 342
                     899***********************6.....4****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-4123195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.206293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17296360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-11297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-15297347No hitNo description
Gene3DG3DSA:4.10.280.108.5E-17297353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-15299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEDIISSSSS SPLLCQEPPP STLQNRLQFI LQSRREWWNY AIFWQATKDA DGRFVLSWGD  60
GHYQGTKSAA NVTVTHGHTP QNSIPNIEKS KLALGIEVLF GESCGGDVTE SEWFYMASVT  120
KTFEAADDLV FRAFSTASNV WLAGHQELQF SDCERTKEAQ LHGITTLVWV PTSFGVVELG  180
SSDLIKEDWG LMQLIGKSLL NANYGTNYDP DQAQISLSSQ SPSSFNIFST HNINHYGDEK  240
KVLANNINGK SSPDSGNSDV SGNPFGPDHS TIKTLPSRKR ARNSENVGRN QLMTPANHVE  300
AERQRREKLN QRFYALRSIV PNVSRMDKAS LLADAVTYIK ELKAKISGLE AKCRVESLKQ  360
EPRTGLLEMY DTKSTFSTVD FTRSASGCVI MDVEVKILGS EAMIRVQSPD VNYPCARLMN  420
VLGDLEFQIS HASVSSVRDV MFQDVIIRVP DGLPSEEALK TAILRKMRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-26222038195Transcription factor MYC3
4rqw_B4e-26222038195Transcription factor MYC3
4rs9_A4e-26222038195Transcription factor MYC3
4yz6_A4e-26222038195Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081344.10.0transcription factor MYC2-like
TrEMBLA0A162ATL01e-140A0A162ATL0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-66bHLH family protein