PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 307aa    MW: 34140.4 Da    PI: 8.0557
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-19139193256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_011081291.1 139 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKRLGLRPRQVEVWFQNRRARTK 193
                     788899***********************************************98 PP

2HD-ZIP_I/II129.71.1e-41139228191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_011081291.1 139 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 228
                     69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.2E-322111IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.1E-18118196IPR009057Homeodomain-like
SuperFamilySSF466891.11E-18126196IPR009057Homeodomain-like
PROSITE profilePS5007117.491135195IPR001356Homeobox domain
SMARTSM003892.9E-16137199IPR001356Homeobox domain
PfamPF000462.4E-16139193IPR001356Homeobox domain
CDDcd000868.60E-16139196No hitNo description
PRINTSPR000312.2E-5166175IPR000047Helix-turn-helix motif
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
PRINTSPR000312.2E-5175191IPR000047Helix-turn-helix motif
PfamPF021832.4E-11195229IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-26195238IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMVEKEDLGL SLSLSFPEKR AVSNPSSNVL HLNLSSSPSP SPFSIINRSS WTDAFPSSDR  60
SSETCRVETR SFLKGIDVNC LPTAGDAEEE AGVSSPNSTI SSVSGKRSER EATGGSDDHD  120
IERASSRGIS DEEDAENSRK KLRLSKDQSA ILEESFKEHN TLNPKQKMAL AKRLGLRPRQ  180
VEVWFQNRRA RTKLKQTEVD CEFLKRCCEN LTEENRRLQK EVQELRALKL SPQLYMQMTP  240
PTTLTMCPSC ERVAVPSAPS SAPQLSTAVD PRPLQMGSAQ PRPITFNPWP ASTPIPHRLF  300
DALQSRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143SRKKLRL
2187195RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081291.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotQ054661e-112HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A068UN801e-160A0A068UN80_COFCA; Uncharacterized protein
STRINGVIT_00s0299g00100.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-107homeobox protein 2