PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080506.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 881aa    MW: 100179 Da    PI: 6.3981
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.23.5e-1566139289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     fY++YA+ +GF +r+ + ++sk  g+ t+r+f Cs  g +++  ++              C+a+lk++++ ++kw vtkl +eH+H++
  XP_011080506.1  66 FYEDYARGLGFGIRIGHFNRSKPAGKATSREFLCSGDGLKKRPGER--------------CRAMLKIELRGENKWIVTKLGKEHTHPV 139
                     9**************************************9998877..............**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1166140IPR004330FAR1 DNA binding domain
PfamPF105511.7E-25277369IPR018289MULE transposase domain
PfamPF044344.2E-11554588IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.127554590IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8565592IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MDVELIDLEE GNMGLCGGIT DDGDDDSNDG GEMNAYGHSL AQDEERIVHE PHVGMEFDSE  60
DSAKMFYEDY ARGLGFGIRI GHFNRSKPAG KATSREFLCS GDGLKKRPGE RCRAMLKIEL  120
RGENKWIVTK LGKEHTHPVL SHGEVHYLNP RRHFTAKMNS VVESHQGVNI VPTGVMYASM  180
DGNHVPPEMN HVGKSMSLPE SNHTFKNTGS LSYMTRHPRR RTLARDAQDL LDYFKKMQAE  240
NPGFYYAIQL DEENRMANAF WADARSRAAY SHFGDAVIMD TIYRRNEYTV PFAPFTGVNH  300
HGQKIMFGCA LLLDESEATY VWLFQTFLTA MNDRPPVSLT TDKDRAIQVA VSKVFPEARH  360
CINKWHMLRE GQERMAQVCL AHPNFQVDLY NCINMTQTVE EFESFWASLL EKYDLKRNDW  420
LQSIYDARRQ WVPAYFRDSF FAIFPCLGFE SSFFDGYVNQ QTTLPLFFRE YERALENSFE  480
REIEADSDTI CTTPVLRTPS PMEKQTANLY TKRMFSKFQE ELVETFVYTA NRIDGDVASS  540
IYRVAKFEDD NKAYIVSVNN AEMKANCSCQ MFEYSGILCR HVLTVFTVTN VLTLPWHYIL  600
KRWTINAKSV IASEEHSEPQ SHESLITRYN NLCKEAMKLA EEGAIASETY SVVLASLREG  660
GKKVSDIKRS IAKVPPSSSQ VSGVGYDDIR TSTATPEMTP LLWPRQDEIL RRFNLNDASV  720
TSHPISDLNA PTMAPVSVNH DDGHSDRTVV LPCLKSMTWV MENKNSTTAS RLAVINLKLQ  780
DYSRTHVGES EVKFSLSRLT LEPMLRSMAY ISEQLSTPAN KVAVINLKLQ DSETTSGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSNAINT KQDNTAKRQR K
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080506.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080506.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_020550366.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2G9GF540.0A0A2G9GF54_9LAMI; Uncharacterized protein
STRINGMigut.N02416.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]