PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 163aa    MW: 17935.7 Da    PI: 5.7595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192171255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr+++ +g+++AeIrd ++  + +r++lg+f taeeAa+a+++a+  ++g
  XP_011080300.1 21 RFRGVRRRP-WGKFAAEIRDSNN--HGARVWLGTFATAEEAARAYDRAAYTMRG 71
                    69*******.**********533..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-152171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-302181IPR001471AP2/ERF domain
CDDcd000184.84E-172180No hitNo description
PROSITE profilePS5103222.82179IPR001471AP2/ERF domain
SMARTSM003801.9E-322185IPR001471AP2/ERF domain
PRINTSPR003676.3E-112233IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-222280IPR016177DNA-binding domain
PRINTSPR003676.3E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDENPKDHRA KEEKEGGGEV RFRGVRRRPW GKFAAEIRDS NNHGARVWLG TFATAEEAAR  60
AYDRAAYTMR GCFAVLNFPE EYPSFASHSS STSWSSLSCS SSSTSSTMVA SSSSTMVASS  120
TMVASSSSSS RSKAEVGKEV FEFEYLDNKL LEDLLEFGEK KPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-312115014114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0669942e-58KJ066994.1 Sesamum indicum clone TilSSR_38195 microsatellite Sesame_38195 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080300.11e-116ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I0113e-52A0A2G9I011_9LAMI; Uncharacterized protein
STRINGMigut.D00418.1.p1e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-15ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]