PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079434.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 166aa    MW: 18584.6 Da    PI: 9.1795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154971123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  XP_011079434.1 49 FSCNYCRRKFYSSQALGGHQNAH 71
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-64676No hitNo description
PROSITE profilePS5015711.0534976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MNYHEPNTSL NLSLSLRTIN LDLVLLQDRS SSPNSSSSPP LSPVEARVFS CNYCRRKFYS  60
SQALGGHQNA HKLERTLAKK SREFSSVVRP HSALMSRPQG FSPGRVHGLV FGLEHQGSPG  120
RFGKREINFG SNWSGSSHEY DHGDKSNVHD HQDDQELSQL DLSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079434.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079434.11e-119zinc finger protein 2-like
TrEMBLA0A2G9GDP73e-45A0A2G9GDP7_9LAMI; Uncharacterized protein
STRINGVIT_11s0052g01120.t013e-40(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-20zinc finger protein 2