PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078886.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 705aa    MW: 77349.9 Da    PI: 6.2064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.5e-08282302526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_011078886.1 282 PCPDFRK-GACRRGDLCEYAHG 302
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.8E-1817140IPR020683Ankyrin repeat-containing domain
PfamPF127964.4E-1155128IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.1E-1858140IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.05959166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0295989IPR002110Ankyrin repeat
CDDcd002042.71E-1561137No hitNo description
PROSITE profilePS5008813.86594129IPR002110Ankyrin repeat
SMARTSM002484.4E-694126IPR002110Ankyrin repeat
PRINTSPR014151.5E-695110IPR002110Ankyrin repeat
PRINTSPR014151.5E-6113127IPR002110Ankyrin repeat
SMARTSM003561.2E-5277303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4281304IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5282302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169282304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4310340IPR000571Zinc finger, CCCH-type
SMARTSM0035634312335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MNVNLSNVEN RDAFASLLEL AANNDLEGFQ KYVDREPLSV DVIGLWYGRQ KGSNQMVLQH  60
RTPLMVAATY GSIDVLKHII SLPEVDVNRS CGSDGNTALH CAASGGSLNA VDVVKLLLAA  120
GADPNLTDVN GCRPVDVIIV SPKFQGMKYS LEMMLKMDAS FQEEQNSGVS IGTSNANSPP  180
LSPSPRNGSP GSPSESGPSP NLTRLSDVPV SPAPEKKEYP IDPSLPDIKN SIYSTDEFRM  240
FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDLCEYA  300
HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHAQEELRP LYVSTGSAVP SPRSSTSAVN  360
AMDFAAAMNP LPGSPSTVPM MSPSPFTPPI SPSNNSISNM GWPPQQNVPP LHLPGSNLQS  420
SRLRSSLNAR DIPPDDLSLF AEIDVQQQQL LNELSYPSIS TNMLSRSARP KTLTPSNLED  480
IFCAESSSPR YSDQALSSAV FSPQHKSAVL NQFQQQQQTM LSPIKTTFSP RNVDHSLMQG  540
PFGLPSPGRM SPRGLEPISP MSARMSMIGQ REKQHQQCQS LSSRGLGSTA ASAVASLEET  600
WSKWENPNET PDWAINTDDF GKLKRASSFD LLNNVEEPDL SWVQSLFKES PQDMKEKYAS  660
RISGTAGAST SSGEGEKSDF LFDQVDQSVL GAWLERLQLD QMMAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078886.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078886.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_020549443.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2G9HGR00.0A0A2G9HGR0_9LAMI; CCCH-type Zn-finger protein
STRINGXP_002526718.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]