PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078717.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 883aa    MW: 100200 Da    PI: 6.4017
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.11.9e-1566139289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      Y++YA++vGFs+ + +  ++k +g i++ +f Cs+e +++++ ++              C+a+l++ +++ + w+vtk++++HnH+ 
  XP_011078717.1  66 LYDAYARRVGFSTHVGQYIRTKPDGPIVSWEFACSREVFKRKNVES--------------CNAMLRIDRKDPDIWVVTKFVEDHNHST 139
                     7***************************************999877..............**************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1266139IPR004330FAR1 DNA binding domain
PfamPF105516.2E-30299391IPR018289MULE transposase domain
PfamPF044343.5E-10576610IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.177576612IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-7587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MDAEVIEVDM GRRQRNRASY THCSEDGEEN LTENSSVGGM SNEVDDRSEK PYVGMEFESE  60
EAAKNLYDAY ARRVGFSTHV GQYIRTKPDG PIVSWEFACS REVFKRKNVE SCNAMLRIDR  120
KDPDIWVVTK FVEDHNHSTV SPSKVHYLRP RRHFAGTTKS VPETADNQND IMVSVDGNHV  180
FYDPIPVVGD TSPIEINRTV RNASPAEKIP VVRNLSSFET NRATTNTIPL MPVQFIQPSS  240
RRRTLGRDAQ NLLTYFRKMQ AENPGFYYAI QLDDENRLSN VFWADARSRI AYSHFGDAVV  300
FDTMYRPNQF QVPFAPFTGV NNHGQMVLFG CALLLDESEA SFAWVFKTWL SAMNDQPPVS  360
ITTDQDRAIK AAVHQVFPET RHCICKWHIL REGQERLSHI YLAHPSFYGE LYSCINFSET  420
IEDFESSWSS VLDKYDLWKN EWLQAVYNAR KQWAPVYFRD TFFAALSSNH GVSSFFDGYV  480
NQQTTIPMFF KQYERALENS LENEIEADYD TMCTTPVLKT PSPMEQQAAN LYTRKVFAKF  540
QEELVETFVY TANKIDGDGT VSKFRVAKYE HDHKAYIVML DVSGMNASCS CQMFEYSGVL  600
CRHILTVFTV TNVLTIPSHY ILKRWTRNAR ASLSDEQEID MQCMESLTVR FNNLCREALK  660
FAEVGAVAAE TYNAAMDVLQ EGARKISMVK KNVTKIKSPS SQGSGSFQDN GSKKASVSIP  720
DTVPSLWPWQ DAAQNRFNIN DAGPPVADLN HPTMAPIAIN RDGSLADNSV VLTCFKSMTW  780
VIENKNSASK VAVINLKLHD YGKTPSGETE VQFRLTRVTL EPMLKSMAYI SQQLSTPANR  840
VAVINLKLQD TKTTSGEAEV KFQVSRDTLA SMLRSMAYIR EQL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078717.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078717.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078718.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078719.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078720.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078721.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_011078722.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020549440.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020549441.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2G9HDS20.0A0A2G9HDS2_9LAMI; Uncharacterized protein
STRINGVIT_13s0047g00330.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]