PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 279aa    MW: 30750.6 Da    PI: 8.6503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
   XP_011078025.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllFARSNIDLKDKWRNL 56
                     79******************************99*9977***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.921161IPR017930Myb domain
SuperFamilySSF466893.16E-15258IPR009057Homeodomain-like
SMARTSM007172.6E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13456IPR009057Homeodomain-like
PfamPF002493.1E-8556IPR001005SANT/Myb domain
CDDcd116606.91E-21656No hitNo description
SMARTSM005265.2E-17117182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.6E-14119190IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.783119187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.16E-15119194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.4E-10122180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LFARSNIDLK DKWRNLSVAN  60
GQGPRDKART PKAKANPTDS PATPLPITQT SASVTPSSQD ASSDVVMLDS SKPLPEGNNA  120
AKYNAMIFEA LSALKEPNGS DSSAIATFIE QRQEVPQNFK RVLTSRLRRL VQQNKLEKVQ  180
NCYRLKRDSQ VDAKSPAMRQ TDTRPRQVQS IGYLGDTVED AAISAAYKIA EAENKSFVAA  240
EAVKEAERVS TMAEDMESLL QFATDCVYQS AHGEIVLMA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078025.10.0telomere repeat-binding factor 4
TrEMBLA0A2G9HZM41e-175A0A2G9HZM4_9LAMI; Uncharacterized protein
STRINGMigut.L01522.1.p1e-154(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.26e-60MYB_related family protein