PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077962.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 273aa    MW: 29620 Da    PI: 8.9536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.9e-12107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + + Rt+ q+ s+ +ky
   XP_011077962.1 107 PWTEEEHRVFLIGLEKLGKGDWRGISRNFVTSRTPTQVASHALKY 151
                      8*****************************************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.107.1E-4329IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.158100156IPR017930Myb domain
SuperFamilySSF466891.5E-15102156IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-16103155IPR006447Myb domain, plants
SMARTSM007179.5E-9104154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10104147IPR009057Homeodomain-like
PfamPF002493.7E-9107151IPR001005SANT/Myb domain
CDDcd001672.49E-8107152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCNA SCRAPSNTGS GVRLFGVQLD IVSSSSSLNI IPIKKSFSLD  60
SLSISTPPSS SSTSSSSRLS INDNSNSIGY LSDGPLPPAL DRKKGVPWTE EEHRVFLIGL  120
EKLGKGDWRG ISRNFVTSRT PTQVASHALK YFLRQATLNK KRRRSSLFDM VGANAASSKA  180
ETAGQQPQID LNTFEEDRKS HGENFQMASQ QNFIWAYEPL NSHELPSTTT TSFDSSSDHQ  240
GPELELTLSA PRSMPQNESS STSLLIGPII SVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077962.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077962.10.0transcription factor MYBS3
SwissprotQ7XC572e-50MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2G9I6681e-104A0A2G9I668_9LAMI; Uncharacterized protein
STRINGEOY304922e-82(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-54MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]