PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077383.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 471aa    MW: 52683 Da    PI: 6.5129
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17140189155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_011077383.1 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
                     78*******************......55************************998 PP

2AP242.12.1e-13232282155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_011077383.1 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 282
                     89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-9140189IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16140198IPR016177DNA-binding domain
CDDcd000182.91E-11141199No hitNo description
Gene3DG3DSA:3.30.730.103.4E-17141198IPR001471AP2/ERF domain
SMARTSM003801.7E-31141203IPR001471AP2/ERF domain
PROSITE profilePS5103217.82141197IPR001471AP2/ERF domain
PfamPF008475.1E-9232282IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16232291IPR016177DNA-binding domain
CDDcd000182.92E-25232292No hitNo description
Gene3DG3DSA:3.30.730.101.2E-15233290IPR001471AP2/ERF domain
SMARTSM003804.2E-32233296IPR001471AP2/ERF domain
PROSITE profilePS5103215.514233290IPR001471AP2/ERF domain
PRINTSPR003674.9E-6234245IPR001471AP2/ERF domain
PRINTSPR003674.9E-6272292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLNLNLTIDP SIPIANRAEM ASDEHLILSG DQMEYSGSSN SSIVNVETSS TAGDENSCSN  60
NFVGFDIWKS NGEYEESEKS SCGYVTKEFF PASGEVRPTQ WLDLSEDRRE VAEEMIIAQQ  120
QQQKRQQVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGL DADINFNSSD YEEDLKQMNN LTKEEFVHIL RRQSTGFSRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFE PSTYDEELSS  300
EPEIGAGENH DLDLNLGIAP PNRANVQTRD MEMGSFQIQS CSNNPPENTG TKDSASVTVG  360
AQLSHGHVSA SGRPFIWSGV DSSFHLAHKG TTIDKSVEVD PSTNWTWKSP EHFHGNHPLP  420
LFPIAASSGF ATSSFTSSSA AIHELPFNTR SQNHYPPPVA NSNNRSHYRW R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077383.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.10.0floral homeotic protein APETALA 2
SwissprotQ8H4431e-107AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2G9GII30.0A0A2G9GII3_9LAMI; Uncharacterized protein
STRINGXP_009606014.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-107related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]