PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077188.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 327aa    MW: 36393.4 Da    PI: 8.5804
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-114266226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C+++ rtG C++G++C+F+H+
  XP_011077188.1 42 GEPDCSYYIRTGLCRFGATCRFNHP 66
                    6899********************9 PP

2zf-CCCH39.31.1e-1288112327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_011077188.1  88 QPECQYYLKTGTCKFGATCKFHHPR 112
                     799********************96 PP

3zf-CCCH26.31.3e-08136158527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C ++ r+G Ck+G +CkF+H++
  XP_011077188.1 136 NCAYYIRNGLCKFGRTCKFHHPQ 158
                     7********************97 PP

4zf-CCCH37.24.8e-12279304227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+++tG Ck+G+ CkF+H++
  XP_011077188.1 279 GQPQCQFYMKTGDCKFGAVCKFHHPR 304
                     7899********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9864068IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-84266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-44665IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-685112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15985113IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-1088112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-789116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-791115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065131159IPR000571Zinc finger, CCCH-type
SMARTSM003560.027131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5136158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464277305IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5277304IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5283305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSLIAFASSA SSSSSSHQDA LLQMNMRPME QMESGPYPVR EGEPDCSYYI RTGLCRFGAT  60
CRFNHPLNRT LAIATARMKS EYPERIGQPE CQYYLKTGTC KFGATCKFHH PRDELGIAGR  120
VALNVLGYPL RPNEINCAYY IRNGLCKFGR TCKFHHPQPS NNMMVPLRDS ALHPPIQSPT  180
TGQLSFHRAH LLPNPQWQTP SSYAPLFMSQ GVASAPGWNT YSGQVEPVSP SENQQGNIQN  240
DGTSYQVEGL NVGSQFGSNT LPIGYYAFKR DNVFPERPGQ PQCQFYMKTG DCKFGAVCKF  300
HHPRERLIPL PDCVLSPIGL PLRPVAP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077184.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_011077185.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_011077186.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_020548981.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_020548982.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-157ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2G9GDR81e-177A0A2G9GDR8_9LAMI; CCCH-type Zn-finger protein
STRINGXP_006480413.11e-166(Citrus sinensis)
STRINGMigut.F01877.1.p1e-167(Erythranthe guttata)
STRINGXP_006428579.11e-166(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-139zinc finger protein 1