PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91806.5 Da    PI: 6.2753
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.53.1e-152785357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k t++t+ q+e+Le++++++++p+  +r ++ ++     g++ +q kvWFqN+R +ek+
  XP_011076980.1 27 KYTRYTEAQIEVLEKVYAECSNPNYFQRSKILREQpnlrGIDSKQLKVWFQNHRSREKQ 85
                    789****************************9999999*******************97 PP

2START123.62.6e-391723763202
                     HHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     aee  +e++ ka+ ++ +W+     +++++ ++  +  s+++ g a+ra+++ + ++++  e+l d++  W+++++ +++l+    g  ga++l+
  XP_011076980.1 172 AEEIREEFLCKATGTAVNWKAILtVKLPSPSSVGAIYVSDTCIGVAARACTIIPIEPVKIIEILKDRA-SWSRNCRNVDVLAEYPAGngGAIELI 265
                     788899****************9999*********999999*****************8877777777.***************99999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a++++++ Rdf+++Ry+  + +g++v+++ Sv+  + +p+     ++vR+++l Sg+li+p+++g s ++ ++h dl+++++++++r+l+
  XP_011076980.1 266 YTQYYAPTTMACaRDFWTLRYTSVSVDGSFVVCEKSVSGSDAVPSspaVLEFVRGRMLASGYLIHPCEGG-SIIHLIDHLDLEASSVPEVVRPLY 359
                     ******************************************9986656689*****************9.************************ PP

                     HHHHHHHHHHHHHHTXX CS
           START 186 ksglaegaktwvatlqr 202
                     +s+   + ++ v +l++
  XP_011076980.1 360 ESSELVAKNMIVPALEY 376
                     ***99999999999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-132189IPR009057Homeodomain-like
PROSITE profilePS5007113.7342286IPR001356Homeobox domain
SuperFamilySSF466892.3E-122387IPR009057Homeodomain-like
SMARTSM003894.1E-72490IPR001356Homeobox domain
PfamPF000468.7E-132785IPR001356Homeobox domain
CDDcd000867.63E-112787No hitNo description
CDDcd146864.42E-479118No hitNo description
PROSITE profilePS5084821.173161389IPR002913START domain
SMARTSM002343.4E-30170380IPR002913START domain
SuperFamilySSF559617.97E-25172359No hitNo description
PfamPF018521.5E-36172376IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-18210353IPR023393START-like domain
PfamPF086703.1E-33693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAITENAVGE TSKRVKGAKS GHEQGSKYTR YTEAQIEVLE KVYAECSNPN YFQRSKILRE  60
QPNLRGIDSK QLKVWFQNHR SREKQKKENG ELLAENKKLA AANELLREEN DCLQQKVAQL  120
ICENEYLQTQ FLSLISRNKA TTKTTDLGLA ARANSPQLPL WSADNNSLLV LAEEIREEFL  180
CKATGTAVNW KAILTVKLPS PSSVGAIYVS DTCIGVAARA CTIIPIEPVK IIEILKDRAS  240
WSRNCRNVDV LAEYPAGNGG AIELIYTQYY APTTMACARD FWTLRYTSVS VDGSFVVCEK  300
SVSGSDAVPS SPAVLEFVRG RMLASGYLIH PCEGGSIIHL IDHLDLEASS VPEVVRPLYE  360
SSELVAKNMI VPALEYIEHT ASETHDKRSH AYGEGPAFLR SFSQRLSRGF NDAITGFTED  420
GWTLLDADAP GDIIVSVKRL KNFEDNRNYD SVICMKASLL LQKVLPAKLM MLLKERRSCW  480
MNINLADHSA VFLGPACFAF PGSRTYNLSG TGVLLGHTNY EDEILEVLRF DRIAHPQHNV  540
SSGDLYHLQI CNGMEDSGVG ACSELIFAPI DRTITNDAVL LSSGFRIISL PSNAGLQSSA  600
NMNSTGPSNA TNVGTAASKP SSVLILAFQF PFETHLQDKV ASIARKYVQH VISYVKNISL  660
EAMPSGSNPE TASNKSDPAT RLMIAPDSTY AATLANLICQ SYRSNLGVEI FGCNCPSTDS  720
LLELIRHHQY AILCFAFTSL PVCLYANQAG LDLLETTANN LLSLTVDRIL GGSNNFSLSS  780
ILPTIMQQGY AILPPGYCIS EMNRRVSYEQ AVVWQVQGSD GSVPCLALAF MNWSFT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076980.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1
TrEMBLB9SVC70.0B9SVC7_RICCO; DNA binding protein, putative
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein