PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074899.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 518aa    MW: 56567.7 Da    PI: 8.3573
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.41.8e-25115217199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a+ +         ++ +   ltl+d++++ We+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+ +++s
  XP_011074899.1 115 FSKILTPSDANNGGGFSVPRYCADLIfpqldfaADPPVQ--NLTLKDTHNNAWEFRHIYRGTPRRHLLTTGWSKFVNAKRLVAGDTVVFM-KKKS 206
                     88*******************99888*****97666666..6************************************************.4449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + el+v+++r+
  XP_011074899.1 207 TNELFVGIRRA 217
                     999******97 PP

2Auxin_resp81.81.6e-27234317183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+++a+ +++FevvY+P+a+ ++Fvvk+ekv++al++ +  GmR++m +et+dss+ ++ +Gt+++++   +  W +S+Wr+L+
  XP_011074899.1 234 AIQKAARGMAFEVVYYPKAGCPDFVVKAEKVKDALRMCWRQGMRVRMGVETDDSSRMTWfQGTIAATTSPGTGPWYGSPWRMLQ 317
                     5788999***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-35105221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-30109228IPR015300DNA-binding pseudobarrel domain
CDDcd100179.42E-24114216No hitNo description
PROSITE profilePS5086313.338115218IPR003340B3 DNA binding domain
PfamPF023623.5E-23115217IPR003340B3 DNA binding domain
SMARTSM010191.6E-19115218IPR003340B3 DNA binding domain
PfamPF065073.0E-25234317IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MSNSSSSASA VASEVDAAIW RAVVGSSVQV PSLNSYVYYF PQGHLEHTSS SASIHNYNFA  60
LPRPFIPCQV LSIRFLSDHP SDQAFVRILL QPLQPLGPRP MNNDDDDTRT DVVSFSKILT  120
PSDANNGGGF SVPRYCADLI FPQLDFAADP PVQNLTLKDT HNNAWEFRHI YRGTPRRHLL  180
TTGWSKFVNA KRLVAGDTVV FMKKKSTNEL FVGIRRASRV GGNEGQDGGE ALEAIQKAAR  240
GMAFEVVYYP KAGCPDFVVK AEKVKDALRM CWRQGMRVRM GVETDDSSRM TWFQGTIAAT  300
TSPGTGPWYG SPWRMLQVTW DEPESLQHVN RVNPWQVEYI PATPLFDPEF PPSKKFRIMQ  360
NPETVPAGEG GFRLPQLTRP MAGHLNPAAL SYAPFSAGMQ GARPDHICIS NASSDRTLQT  420
SNELPKNDAA PELKTVSTVL SIGSSYSDNL SHGSQSSVQF RSTDLLGQPG PSSSSKTGAN  480
SFQLFGKIIQ MPEPVGGGSK LKATCTDGGK ESSVHPPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-651533851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074899.10.0auxin response factor 17-like
SwissprotQ84WU61e-140ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A022Q7N30.0A0A022Q7N3_ERYGU; Auxin response factor
STRINGMigut.N03328.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-131auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]