PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074553.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 100aa    MW: 11391.8 Da    PI: 9.7722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-101558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +++ da +++ ++   +W+ Iar +  g+t+++++ ++
   XP_011074553.1 15 SWTPKQNKQFEDALAMYDKDtpdRWHNIARAVS-GKTAEEVRRHY 58
                     7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.8181166IPR017884SANT domain
SMARTSM007178.6E-91264IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-131469IPR009057Homeodomain-like
PfamPF002492.3E-71558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-61567IPR009057Homeodomain-like
CDDcd001671.10E-61661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSSMSSSR GSSSSWTPKQ NKQFEDALAM YDKDTPDRWH NIARAVSGKT AEEVRRHYEA  60
LEKDIMKIET DQVPIPNYKA MANGRGYGNE QRLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-326100193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074553.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074553.13e-70protein RADIALIS-like 3
SwissprotQ1A1731e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A022R1R64e-48A0A022R1R6_ERYGU; Uncharacterized protein
STRINGMigut.N00487.1.p7e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-34RAD-like 6