PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 269aa    MW: 29915.7 Da    PI: 8.5648
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18126180256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee F+ +++++ ++++eLA++l+L  rqV vWFqNrRa+ k
  XP_011073660.1 126 RKKLRLTKAQSALLEESFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 180
                     678899***********************************************98 PP

2HD-ZIP_I/II123.11.4e-39126215191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k q++lLEesF+++++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_011073660.1 126 RKKLRLTKAQSALLEESFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 215
                     69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-18116183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-18119185IPR009057Homeodomain-like
PROSITE profilePS5007117.475122182IPR001356Homeobox domain
SMARTSM003891.1E-15124186IPR001356Homeobox domain
PfamPF000463.6E-16126180IPR001356Homeobox domain
CDDcd000861.36E-15126183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PfamPF021835.0E-10182216IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.5E-23182225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGIDDFCQTG LVLGLGLSSP SSSAAAGDQK SKKPAAARKT TEPSLTLSLS GETFDQVRPV  60
RKVDFDYNKV SCTDRQSADL YGQDSGASSF SNVSVKRERE TGGEEVEIER VSSRASDEDD  120
DGSNGRKKLR LTKAQSALLE ESFKHHSTLN PKQKQELARE LKLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKKCCETLTD ENRRLQKELQ ELKALKLAQT PLYMQLPAAT LTMCPSCERI  240
GAENAAKSTF NMAPKPHFYS PFTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073660.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X1
SwissprotP466046e-96HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA5B6261e-130A5B626_VITVI; Putative uncharacterized protein
STRINGVIT_00s0732g00010.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-72HD-ZIP family protein