PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072679.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 393aa    MW: 43582.2 Da    PI: 4.6609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19119168255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  XP_011072679.1 119 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDTEARRIRG 168
                     69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-32119177IPR001471AP2/ERF domain
CDDcd000184.49E-32119177No hitNo description
PROSITE profilePS5103224.052119176IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22119177IPR016177DNA-binding domain
SMARTSM003803.2E-37119182IPR001471AP2/ERF domain
PRINTSPR003671.2E-11120131IPR001471AP2/ERF domain
PfamPF008473.1E-11120167IPR001471AP2/ERF domain
PRINTSPR003671.2E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MCGGAIISDI IAPASRSSRR LTADLLWGSG SVDLYKKKNP GNYHSKPMRS QPVIDLDDDF  60
EADFQEFKDF SDDEGEIDVK KPFSFSASKN PGLKGLKSAD SAEYDDDAEK SSKRKRKNQY  120
RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD TEARRIRGKK AKVNFPEYVP  180
AAASRRTVKV NSHKVLPKGS TESVQPNVNE SVNFMNMLNS DYYDSLGFLE EKPQVKQYGF  240
ADTCPATGDM RLKPLTPTDG TNVYFSSDQG SNSFDCSDFG WGENCAKTPE ISSVLSAVIE  300
DDQAQFMEDG GPAKRAKSSS EDLVPRDENT VNKVSDDLSA FDSQMKLFQM PDLDSNWDAS  360
IDAFLNGDAT QDGANAMDLW SFEDVPAMLG GVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21119176260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787317e-63KF278731.1 Coffea arabica ethylene response factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.10.0ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A2G9GX080.0A0A2G9GX08_9LAMI; Uncharacterized protein
STRINGMigut.I01124.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-72related to AP2 12