PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072549.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 244aa    MW: 26635.9 Da    PI: 7.453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.63e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l+ +v+++G g Wk I           +R+  ++k++w++
   XP_011072549.1  5 KQKWTAEEEEALKAGVAKHGAGKWKNILIDSEfapklANRSNVDLKDKWRN 55
                     79****************************99999***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.874162IPR017930Myb domain
SuperFamilySSF466891.94E-15258IPR009057Homeodomain-like
SMARTSM007175.3E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-14456IPR009057Homeodomain-like
PfamPF002492.9E-10555IPR001005SANT/Myb domain
CDDcd116607.38E-21656No hitNo description
Gene3DG3DSA:1.10.10.108.3E-5108142IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.57E-5109142IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALKAGV AKHGAGKWKN ILIDSEFAPK LANRSNVDLK DKWRNMGASH  60
GQGCRDNSVT PKAKATASNA AAPKPQNSST VFSSKEKANE NPPHSPQETK NVPKYNAMIL  120
EALSSLKDPS GSDIGAIVGF IEVLQCYKIK DASLGTKTPS PKQKDVRPRP SQQSSLTISD  180
ETVEDAARSA AQWIAEAENK AFVMAEALKE SERVSQMAED ADAMHTLCKE LFERCSRGEY  240
ILMD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072549.10.0telomere repeat-binding factor 4 isoform X2
TrEMBLA0A2R6PV911e-90A0A2R6PV91_ACTCH; Single myb histone like
STRINGXP_006426592.19e-86(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-48MYB_related family protein