PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 272aa    MW: 30018 Da    PI: 9.3523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l+ +v+++G g Wk I           +R+  ++k++w++
   XP_011072548.1  5 KQKWTAEEEEALKAGVAKHGAGKWKNILIDSEfapklANRSNVDLKDKWRN 55
                     79****************************99999***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.874162IPR017930Myb domain
SuperFamilySSF466892.3E-15258IPR009057Homeodomain-like
SMARTSM007175.3E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-14456IPR009057Homeodomain-like
PfamPF002493.4E-10555IPR001005SANT/Myb domain
CDDcd116602.00E-20656No hitNo description
Gene3DG3DSA:1.10.10.101.2E-14108190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.1E-14109174IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.1E-15109188IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.485111179IPR005818Linker histone H1/H5, domain H15
CDDcd000737.99E-11113192No hitNo description
PfamPF005382.1E-11113171IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALKAGV AKHGAGKWKN ILIDSEFAPK LANRSNVDLK DKWRNMGASH  60
GQGCRDNSVT PKAKATASNA AAPKPQNSST VFSSKEKANE NPPHSPQETK NVPKYNAMIL  120
EALSSLKDPS GSDIGAIVGF IEQKYEVPQN FRRLLSSKLR KLVLQGKLEK VLQCYKIKDA  180
SLGTKTPSPK QKDVRPRPSQ QSSLTISDET VEDAARSAAQ WIAEAENKAF VMAEALKESE  240
RVSQMAEDAD AMHTLCKELF ERCSRGEYIL MD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072548.10.0telomere repeat-binding factor 4 isoform X1
TrEMBLA0A2R6PV911e-116A0A2R6PV91_ACTCH; Single myb histone like
STRINGXP_009616026.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-60MYB_related family protein