PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 468aa    MW: 51521.3 Da    PI: 5.4062
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-1565109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++v+a k++G   W+ I +++  ++t+ q++s+ qk+
   XP_011072048.1  65 RERWTEEEHKRFVEALKLYGRA-WRQIEEHVA-TKTAIQIRSHAQKF 109
                      78******************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.98E-1659114IPR009057Homeodomain-like
PROSITE profilePS5129420.0360114IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1663112IPR006447Myb domain, plants
SMARTSM007177.7E-1264112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-865105IPR009057Homeodomain-like
PfamPF002498.1E-1265108IPR001005SANT/Myb domain
CDDcd001675.27E-967110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLDYTLEKIN AVGFCMDQTA GPCRDAFVAV SSQLESVTTQ SKALSSNGNG YAPKVRKPYT  60
ITKQRERWTE EEHKRFVEAL KLYGRAWRQI EEHVATKTAI QIRSHAQKFF AKVTRDPCVD  120
AEGSLSPIEI PPPRPKKKPL HPYPRKTVDP ANTEVVVSNQ VGGTTESAAE RENYSPTSVF  180
SAIGSDNLES TVAEMHKSRL SPASCATDAL SGNDNEYATS NISSKEEDGF HLSMKISSAS  240
VPDNKTTMKF ELFPQETESS LDSPNAGEPY TSIKLFGKTV VVRDTPKQPL DVVENSESLL  300
PGAVDDKSEN NNDKFAQGLS PNNLDSRVVF GFVSNSSSPA CLPPQPLANI YCPMENLITL  360
PWSTWYHSTA FPYSSSYNNT VIENFEGLKD EELQREGSLV GSNSGSTGEV NNDNRNSDVV  420
DSKQLSSPGK KECGKGFVPY KRCLAERDDK LSISFLQERE GQRARVCS
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072048.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548212.10.0protein REVEILLE 7-like isoform X1
RefseqXP_020548213.10.0protein REVEILLE 7-like isoform X1
RefseqXP_020548214.10.0protein REVEILLE 7-like isoform X1
SwissprotF4KGY62e-48RVE1_ARATH; Protein REVEILLE 1
TrEMBLA0A4D8Y0G51e-127A0A4D8Y0G5_SALSN; Circadian clock associated 1
STRINGMigut.O00255.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-44MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]