PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071461.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 1152aa    MW: 128047 Da    PI: 8.91
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-094479340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     rWT eE  +++da +++G++ Wk++a  +  +R+++++
   XP_011071461.1 44 RWTMEELARFYDAYRKYGKD-WKKVAGAVR-NRSAEMV 79
                     9*****************99.*********.***9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-94088IPR009057Homeodomain-like
SMARTSM007170.00114189IPR001005SANT/Myb domain
PfamPF002491.4E-74480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-54480IPR009057Homeodomain-like
CDDcd001675.30E-54479No hitNo description
PfamPF065849.7E-33648748IPR033471DIRP domain
SMARTSM011352.6E-57648749IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1152 aa     Download sequence    Send to blast
MGPARKSRSL SKRHVSEVSP SKDGDGAKRS NIRKRKLSDM LGPRWTMEEL ARFYDAYRKY  60
GKDWKKVAGA VRNRSAEMVE ALYMMNRAYL SLPHGTASAA GLIAMMTDHY SNLAGSDSDQ  120
ESNDGAGSSR KTQKRARGKV QPTTSKATDE QLVSHSQSVA SNYGCLSLLK KKRSGGSRPC  180
PVGKRTPRFP VSFSYENING EGYVSPTRQG MKLKASGNDD EVAHEIAIAL AEASQKGGSP  240
QVSRTPGRRA ESVTSSPFRN AQRKHSLVEM PNTKILDADM DEEDLEGSTE GDIGELSGCN  300
PSMKDSISTG AVRKKVRKLE GKKFDVDNNS ENHLDDIKEE CSGTEEGQRF SATQGKLDAE  360
VTNTQISRSF MQNQGKKSKK VLFRRDEAPA FEALQTLADL SLMMPTENED DPILQFKDED  420
EDCPNELVSS ENLPLNLQKE KRRNLGVKMK GHQPISSCEV ASSKTSKPGK APVLEVSSIP  480
EENQDPHQSI SKTTRKKQKM QMPKIRKTEA HSDIHLSESP GVEAGDAGKK LMINSKKSSQ  540
SGSPNLMKNS ENSSTVDLRK EASDSAQSAV RLPVVNQVNL PTKVRSRRKM HLKKPQAQKD  600
LKFLDKISDD HSNPPFSSLH DRAFNLKKKL SNCLWNPHLR RWCTYEWFYS AIDYPWFAKR  660
EFVEYLYHVG LGHVPRLTRV EWGVIRSSLG KPRRFSEQFL KEEKEKLNQY RDSVRKHYTE  720
LREGVREGLP TDLARPLSVG QRVIAIHPKT REVHDGSVLT VDHSRCRVQF DRHELGVEFV  780
MDIDCMPLNP FENMPALLGA QPIAVDKFFE NFNELKINGR AQDFMKLYSG DNVDNADGIS  840
DLSPLANRAS SSNLTKVASA NNNMQTRIGS AETAGYQQTS YSQPATLAQI QAKEADVQAL  900
AELTRALDKK EAIVLELRQM NNDVLETQKD GGSSLKDSEP FKKQYAAVLV QLNEANEQVS  960
SALYCLRQRN TYQGNTPLAW PRPGTNLADS GGELSSFDRS ACQNHDSGSH ANEIIDSSRT  1020
KAQAMVDAAV QAMSSLKSRE HTIEKIEEAI DYVNDQLPSD DSSTAVVPDP KPTTPSNIKS  1080
HIPSELISKC VATLLMIQKC TERQFPPSDV AQILDSAVTS LQPRSPQNLA VYTEIQKCMG  1140
IIRNQIMALI PT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071459.10.0protein ALWAYS EARLY 3
TrEMBLA0A4D8YXC60.0A0A4D8YXC6_SALSN; Uncharacterized protein
STRINGMigut.N00106.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding