PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070884.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bZIP
Protein Properties Length: 195aa    MW: 22617.2 Da    PI: 6.399
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1408.2e-1386140559
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                     +++rr+++NRe+ArrsR RK+  ++eL      L +eN+ L+++l++  +  +k+
  XP_011070884.1  86 RKQRRMISNRESARRSRMRKQRHLDELWSQLLRLRTENHNLIDRLNHVLESHDKV 140
                     79****************************************9999877666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-1482146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.46184147IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-1286135No hitNo description
PfamPF001702.5E-1086140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-1086159No hitNo description
CDDcd147026.73E-1987138No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MIPSETQAMN MNNYFSQDNP SIFPANFRFI HTNLPPFHFS TFFTNLPNNL QTSLSIPDLA  60
PNSSCISNNS TSDEAEEHQV SIIDERKQRR MISNRESARR SRMRKQRHLD ELWSQLLRLR  120
TENHNLIDRL NHVLESHDKV VQENVRLKEE ASDLRRMLTD LQVNSSYTSI LRDLEQLPGD  180
TARLPAESSD PSVTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070884.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077776.16e-89basic leucine zipper 43
SwissprotQ9FMC29e-41BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2G9I8256e-82A0A2G9I825_9LAMI; Uncharacterized protein
STRINGXP_009611005.18e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-46basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]