PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 244aa    MW: 26140 Da    PI: 7.1004
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.1e-39381391101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++i +lqqq+++l+ael
  XP_011070190.1  38 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLMHIPANRRHDAVVTISYEAQARLSDPVYGCVSTIIALQQQVASLQAEL 132
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     ++++++l
  XP_011070190.1 133 SVVQTQL 139
                     **99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99937139IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3938136IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDVPPGDGTS DNRRVGPGKR RAATHPEAAD GAPPANAPCG ACKFLRRKCV SGCIFAPHFG  60
SDQGAARFAA VHKVFGASNV SKLLMHIPAN RRHDAVVTIS YEAQARLSDP VYGCVSTIIA  120
LQQQVASLQA ELSVVQTQLL NTRFAMANAL HHNSPPPPQQ QQQQHIAATY SNTSSASNTL  180
ISMHGFSPNL GSDTTAPSKT TFHDHPMNSS ARLSAPTTAT QHDHEEEEED ESHDPVAFAN  240
HIFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-39281411113LOB family transfactor Ramosa2.1
5ly0_B1e-39281411113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0348392e-56KJ034839.1 Sesamum indicum clone TilSSR_6040 microsatellite sesame_6040 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070190.10.0LOB domain-containing protein 20
RefseqXP_020547496.10.0LOB domain-containing protein 20
SwissprotQ9SRV31e-75LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2G9GRZ81e-108A0A2G9GRZ8_9LAMI; Uncharacterized protein
STRINGPOPTR_0013s06070.13e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-68LOB domain-containing protein 20