PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0341s0015.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 384aa    MW: 42729.2 Da    PI: 9.0825
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0341s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-08169227255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +kGV  ++k++ W+A+I+       ++ +   + +lg + t++eA + ++  ++kl++
  Sphfalx0341s0015.1.p 169 IFKGVGLHSKSKLWEAHIWLGDLdpvRKnQGqGQLYLGAYETEDEAVRVHDLVALKLRK 227
                           69*****************9333466555336**********99*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-6168236IPR016177DNA-binding domain
SMARTSM003800.0045169243IPR001471AP2/ERF domain
PROSITE profilePS5103212.655169236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-6170237IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-6272345IPR016177DNA-binding domain
SMARTSM003803.0E-11273351IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-6273345IPR001471AP2/ERF domain
PROSITE profilePS5103211.535273345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MADTFVDMNH EYDNDLVNVL EAIAAASEKA ASIRGTICED GADQRQQQPV VPSAAPRPAE  60
SHDELMCPGS LVGVQAERLP RRAERDARKK SKRRIDGSMN RPIDLKEQAT RSTGASEIAA  120
GPPASKKPKR MVKGTTSCEL TAAAAAETTR PQKRKYPNVP STQERATSIF KGVGLHSKSK  180
LWEAHIWLGD LDPVRKNQGQ GQLYLGAYET EDEAVRVHDL VALKLRKNDK YELNFNDPGA  240
YAFEFPRLEA LDTRDYIWSF RRNAVCFSCG TSRFKGVSKH SSGKKWEVRI GYTTTASSGA  300
AGGSRIIKKE DRYLGLHATE EEAARCVDMV ALHFHGWEDA ITNFAPSQYT KEMVQQHLER  360
LEKKDYKIPP DLLASWPKFH RAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-25AINTEGUMENTA-like 5