PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0228s0028.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 465aa    MW: 52050 Da    PI: 5.1585
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0228s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82.1e-1651110155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  ++ ++  k+ k+++lg ++ +e Aa+a++ a++k++g
  Sphfalx0228s0028.1.p  51 SIYRGVTRHRWTGRFEAHLWDkSCWnDKqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 110
                           57*******************999964476456*************************98 PP

2AP250.84.2e-16153204155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Sphfalx0228s0028.1.p 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDVAAIQYRG 204
                           89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1251110IPR001471AP2/ERF domain
CDDcd000181.06E-1051120No hitNo description
SuperFamilySSF541711.24E-1651119IPR016177DNA-binding domain
PROSITE profilePS5103219.66452118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1552118IPR001471AP2/ERF domain
SMARTSM003801.4E-2652124IPR001471AP2/ERF domain
PRINTSPR003674.4E-65364IPR001471AP2/ERF domain
PfamPF008479.7E-12153204IPR001471AP2/ERF domain
CDDcd000183.88E-15153214No hitNo description
SuperFamilySSF541711.18E-17153214IPR016177DNA-binding domain
PROSITE profilePS5103218.518154212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18154213IPR001471AP2/ERF domain
SMARTSM003806.7E-26154218IPR001471AP2/ERF domain
PRINTSPR003674.4E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVKVSKMNAS VIAKREPNGA GGSMPKPART RKLATKNTEE KAQVASTGRS SIYRGVTRHR  60
WTGRFEAHLW DKSCWNDKQN KKGKQVYLGA YDDEEAAARA YDLAALKYWG PETQVNFKIS  120
GYEKEINEMR NISREEYLAT LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYSTQEE AAAAYDVAAI QYRGPAAVTN FELSRYTELQ RLGELERTYH MGDNMTACPE  240
QENISMPYPN ISISSGYVSP CSLANEESVA PYQSASNIPS ASFANYIPQD SSPLFPMSIS  300
KSLELPFHEL PKLELTAGPT AELSTLHKYS CINFVREKLY SESDVSTAVA GLSEGLVMTE  360
RFYDDETDDN DVGTTTKEEV FSVTPLLESL DGILGSDHQP ADASETWMHD DFASFDTSPF  420
FRSDFDDPAD FIVGAEMQQE DLFLDFIIPK PCPSLYPFPI STCY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.11e-69AP2 family protein