PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0144s0024.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 938aa    MW: 101392 Da    PI: 5.5632
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0144s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.62.2e-964739351374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........ 81 
                           lv+lLl cAea+++++ e+a  lL++l+ ++sp+gdpmqR+a++f+eAL+ r  r+ +   +  + s+++ +++ ++ a++        
  Sphfalx0144s0024.1.p 473 LVHLLLGCAEAIDASEYERAGDLLCHLRAISSPQGDPMQRIAFHFAEALSDRRRRHNN---NNTNLSNSQ-YDQYRHKASYcdlvrpat 557
                           68**************************************************999222...222222222.234444444457788999 PP

                  GRAS  82 .......................................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqa 131
                                                                  ++f+ev P+ kf+h+t NqaIleav++++rvH++D++i+qGlQWpa++q+
  Sphfalx0144s0024.1.p 558 nstsrnaaasacsrpaaaaalvqqlpvqqldeysdlqayQAFYEVLPFAKFAHFTGNQAILEAVASSSRVHVVDLEIGQGLQWPAFFQS 646
                           999999******************************99999************************************************ PP

                  GRAS 132 LasRpegpp.slRiTgvgspesgskeeleetgerLakfA..............eelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
                           L  Rp+gpp +lR+T+vgs    s+ +l++tg+rL++f               ++  ++fe+n++++++++d+++  ++++++E+l+Vn
  Sphfalx0144s0024.1.p 647 LVLRPGGPPaHLRMTAVGS----SSSTLQQTGRRLTQFVagtlvvdnhmeqqqQQKSLQFEYNPVTVEKIQDFHPGLINLRSDETLVVN 731
                           *****88888*********....999999999999998522222222222221345689****************************** PP

                  GRAS 206 lvlqlhrll............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                           +++ lh+ll            + +++++   +++L +++s+ P+vv + e ea+h+ + F+ rf+eal+y+ alfd+lea+lpr+s +r
  Sphfalx0144s0024.1.p 732 CSHILHKLLakneetlttttsAATGAVAA-LENMLLMIRSMGPTVVCLLEVEANHDVNFFMSRFVEALHYFCALFDTLEATLPRDSPQR 819
                           *********99988888876544444444.899******************************************************** PP

                  GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee................. 354
                           + +E+  ++ +i+++va+eg +r++rh + ++W++ +++aGF+ +  s++a +qa+lll+ +k++  + +++                 
  Sphfalx0144s0024.1.p 820 NQIENTTFAAQIKDIVAAEGWDRQARHLRSHSWQSHFQNAGFRLLLPSSYAIEQAHLLLALHKQQQQQQQQQqqwvtscststnvstpy 908
                           ***************************************************************55444443347888888999999999 PP

                  GRAS 355 .......sgslvlgWkdrpLvsvSaWr 374
                                  sg l+lgW+d p+++vS+W+
  Sphfalx0144s0024.1.p 909 klaqltdSGVLTLGWHDTPIIAVSSWT 935
                           999999899999**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.39447891IPR005202Transcription factor GRAS
PfamPF035147.6E-94473935IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MASAQIHQRT VQQAGSHLQQ HHAVGNALVG SAPALGALRW KASGTHGGAA GDILDPSAAC  60
FKQAKEHQAG TAAMMQLLHA VEPTSVLDLQ TSPGRSCSST VSSLSSQQSS LWSHDVADSS  120
SPALVGAAHK TITIAQDQQQ LQDMISCCRP DHRILDSSGN SAAAAMFQNS QLAAASSVEQ  180
ALLHYAAGPG ETFLSWMDSC MEDAHGAHDL ELTDFEECDV GDQECPATSQ LVKLLDHDQG  240
PIAPGPSCSD MDFVNAVDVQ GFEYGMNQQL HIRSVENNNS FPSCISSLVC DQQADIMLDS  300
EQPGLSHLDE IKFFNSAASA SLRLCRVPAA AAAAAGPLHE LSNDHASVAE QGSTTTTTVI  360
AADPFSASTL MFTTEQLWSP AAAGSSQIMN ILHADQQQPV LTTDDQSISL LGRSQNLNYN  420
LSNVAISCSG DQSGRSSTYT STDHHGSQIF IPSAGQQQHL DQADNSTSGG LQLVHLLLGC  480
AEAIDASEYE RAGDLLCHLR AISSPQGDPM QRIAFHFAEA LSDRRRRHNN NNTNLSNSQY  540
DQYRHKASYC DLVRPATNST SRNAAASACS RPAAAAALVQ QLPVQQLDEY SDLQAYQAFY  600
EVLPFAKFAH FTGNQAILEA VASSSRVHVV DLEIGQGLQW PAFFQSLVLR PGGPPAHLRM  660
TAVGSSSSTL QQTGRRLTQF VAGTLVVDNH MEQQQQQKSL QFEYNPVTVE KIQDFHPGLI  720
NLRSDETLVV NCSHILHKLL AKNEETLTTT TSAATGAVAA LENMLLMIRS MGPTVVCLLE  780
VEANHDVNFF MSRFVEALHY FCALFDTLEA TLPRDSPQRN QIENTTFAAQ IKDIVAAEGW  840
DRQARHLRSH SWQSHFQNAG FRLLLPSSYA IEQAHLLLAL HKQQQQQQQQ QQQWVTSCST  900
STNVSTPYKL AQLTDSGVLT LGWHDTPIIA VSSWTLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5448093526379Protein SCARECROW
5b3h_A6e-5448093525378Protein SCARECROW
5b3h_D6e-5448093525378Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-60RGA-like 2