PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0124s0017.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CAMTA
Protein Properties Length: 1211aa    MW: 135413 Da    PI: 6.3551
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0124s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1167.42.3e-52241403117
                  CG-1   3 kekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                           + +krwlk+ e+++i+++++ h ++l   ++ rp sgsl+L++r ++ryfrkDG++w+kk+d +tvrE+he+LK+g+v+vl+cyYah+e
  Sphfalx0124s0017.1.p  24 EAQKRWLKPVEVCEIINQYQTHGFKLnpIAPVRPASGSLFLFDRNVLRYFRKDGHNWRKKRDLRTVREAHERLKIGNVDVLHCYYAHGE 112
                           459******************9998866789********************************************************** PP

                  CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                           +np+fqrrcyw+L+ ++e+ivlvhy+ev
  Sphfalx0124s0017.1.p 113 TNPNFQRRCYWMLDPSMEHIVLVHYREV 140
                           **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.68918146IPR005559CG-1 DNA-binding domain
SMARTSM010763.4E-6721141IPR005559CG-1 DNA-binding domain
PfamPF038597.6E-4924139IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-5575670IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.2E-15584670IPR014756Immunoglobulin E-set
PfamPF127961.0E-6767850IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.58E-17769883IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.2E-18770884IPR020683Ankyrin repeat-containing domain
CDDcd002044.03E-14770881No hitNo description
PROSITE profilePS5029717.873789883IPR020683Ankyrin repeat-containing domain
SMARTSM002481.1E-5822851IPR002110Ankyrin repeat
PROSITE profilePS5008811.14822854IPR002110Ankyrin repeat
SMARTSM002483500861890IPR002110Ankyrin repeat
SMARTSM00015310943965IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.49E-79811058IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0759911008IPR000048IQ motif, EF-hand binding site
SMARTSM000150.09310061028IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.29710071034IPR000048IQ motif, EF-hand binding site
PfamPF006120.02410091027IPR000048IQ motif, EF-hand binding site
SMARTSM000150.5910291051IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.82810311058IPR000048IQ motif, EF-hand binding site
PfamPF006120.006210341050IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1211 aa     Download sequence    Send to blast
MASARRPRSH PLKPKTGIQE IITEAQKRWL KPVEVCEIIN QYQTHGFKLN PIAPVRPASG  60
SLFLFDRNVL RYFRKDGHNW RKKRDLRTVR EAHERLKIGN VDVLHCYYAH GETNPNFQRR  120
CYWMLDPSME HIVLVHYREV DELGRIIVSP SHGPSPREER SRSSSMSVGH EHNGGSAGES  180
EEASAFSTAE AFSSVLNKQA AQLDQVSPQH QKPGALEVGP RGNGLDPLSM PKSSETVHPD  240
LAGIESMLNS PSVFAPGASP SSFSLLSPLG SDHFNRQQQQ HEHLVPVQGS SIESMNSAKL  300
GSRFTGVGPQ PSTKDEELDM VGWKELLAST QSNQTIPSND TGVPGGSATA GEPATTENTD  360
DLNWADMLEQ CMTPESHLAM LDSVQSQDDP VVQSANDLSQ TQALSYLKQI LSPTVPPTVQ  420
HQEPLTKDDA LQLYQKRFPM TRMDLQQTDA QLDSQTMELG DSKFEHVQNP GPERSLTEAV  480
GNKNMDKSLT KFDGLNNLKF ESSIEQSGVN DSVLNNFRKL DSFGRWMSTH LSSNNENFLL  540
DPGSPHTPVL EDHGVSEAGN RKSVEMQTET GLHTPVIREQ SYSIIDFSPN FGYSFEETKV  600
LVTGMFLGEY NNRVSDIRWC CMFGEVEVPA EVLGGGALRC KAPAQATGRV SFYITCGDRQ  660
PHSEIREFEY CSALRGYSKP DHFERSHRIE NEMLLKIRLT CMLLEVADAP KSDNEGDLQK  720
QSSHGDCFDI GYSRDEWLDL EHLAMSPGNS QALDFHEQLL QMLLKCHMQK WLLCRGEDEV  780
KGPAVLNREG QGVLHMTAAL GYHWAIAPLV TAGLPINFRD IHGWTALHWA AWYGQEEAIL  840
HLLKAGADPA AVTDPTVTIT TGQTAADLAA SNGYVGISGF LAESSLTSRL SAMTFFEDPE  900
DIKLSHIAGH NAVAKLDQES LKRSVVGDED QLSLEASIDA VQNAAKSKAL IQAAFRQHSF  960
RKREKDALLA SMPSAEYNLT ADELQAWMTA NAAKKIQKAY RGHHGRQQSA ATHIQHKYRG  1020
WKVRREFLRF RQQVVMLQAH VRGHIVRKRF TKLLWSVSVV EKAVLRWLRR RHGLRGFRNE  1080
FILPDRDDDE FLREGRKKTE VALDKDVTRV VGMVPSRKGR AQYRRLREKS LQSHQTGSSE  1140
LDVCQPTQSS EPEVQQQMQS SQARSPEDIL EIDDPFTSFT ASEYQGQSFQ LPPLHDFLDS  1200
TDDTLMTFTD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1918923ESLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001775223.10.0predicted protein, partial
TrEMBLA9T9G00.0A9T9G0_PHYPA; Predicted protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.21e-105ethylene induced calmodulin binding protein