PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0084s0048.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 516aa    MW: 56575.3 Da    PI: 6.0881
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0084s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4401.7e-1341475131374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv+ Ll+cAeav++gdl +a++++++++ lasp g pm ++aa+f eAL  r+++ +++l++ ++  e++ ++ +e l++   ++e++P
  Sphfalx0084s0048.1.p 147 LVHSLLACAEAVQHGDLVRAEETVCHIQLLASPPG-PMGKVAAHFIEALTLRIYS-GTSLVRNVTNYESD-NSLTELLHF--HYYETCP 230
                           689******************************98.9*****************9.77777766666664.456666666..49***** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                           +lkf+hltaNqaIlea+ege++vH+iDf++++GlQWpaL+qaLa Rp+gpp  lR+Tg+g+     + + +e+g +La++Ae+++++fe
  Sphfalx0084s0048.1.p 231 YLKFAHLTANQAILEAFEGEKQVHVIDFNLMHGLQWPALIQALALRPGGPPaLLRLTGIGP----PHASGNEIGMKLAQLAESVNIEFE 315
                           ***********************************************8888789*******....89********************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           f+ +va +l+++++++L+v+pgEa+aVn+vlqlhrll ++++    ++d+vL+ v +l+Pk+v++ve+ea+hn++ Fl rf+eal+yys
  Sphfalx0084s0048.1.p 316 FRGVVALKLDEVKPWMLQVSPGEAVAVNSVLQLHRLLYSDGPHVPaAIDDVLQSVLGLKPKIVTIVEHEANHNAPGFLSRFTEALHYYS 404
                           ****999******************************9998876669****************************************** PP

                  GRAS 266 alfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                           ++fdsl + +lp++s+++  vE   lgrei+n+vaceg +r+erhe+le+Wr+r+ +aGF+p++l+ +a kqak+ll  +++dgyrvee
  Sphfalx0084s0048.1.p 405 TMFDSLeACNLPPQSSQQLLVEMY-LGREICNIVACEGVARVERHENLEQWRRRMVKAGFQPLQLGFNALKQAKSLLTLFSGDGYRVEE 492
                           ******8889**********9977.**************************************************************** PP

                  GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                           ++g+l+lgW++rpL++ SaW+
  Sphfalx0084s0048.1.p 493 NNGCLTLGWHTRPLIASSAWQ 513
                           ********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.644121493IPR005202Transcription factor GRAS
PfamPF035145.8E-132147513IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MACSSSDLSG WIEGMIEELT ASNGQHSSRS PLVTTDSPHC THNALDSLLD TTGFPSQQAA  60
APSSSQHYQE TLVDRFTGQQ LPCMTSLPES SNSWMLHHVP STTSYSSKTM LPPPPSAPME  120
RINGRVQQKV VNSNAALKEQ EDSGVQLVHS LLACAEAVQH GDLVRAEETV CHIQLLASPP  180
GPMGKVAAHF IEALTLRIYS GTSLVRNVTN YESDNSLTEL LHFHYYETCP YLKFAHLTAN  240
QAILEAFEGE KQVHVIDFNL MHGLQWPALI QALALRPGGP PALLRLTGIG PPHASGNEIG  300
MKLAQLAESV NIEFEFRGVV ALKLDEVKPW MLQVSPGEAV AVNSVLQLHR LLYSDGPHVP  360
AAIDDVLQSV LGLKPKIVTI VEHEANHNAP GFLSRFTEAL HYYSTMFDSL EACNLPPQSS  420
QQLLVEMYLG REICNIVACE GVARVERHEN LEQWRRRMVK AGFQPLQLGF NALKQAKSLL  480
TLFSGDGYRV EENNGCLTLG WHTRPLIASS AWQYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6513851210378Protein SCARECROW
5b3h_A5e-651385129377Protein SCARECROW
5b3h_D5e-651385129377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361039.10.0DELLA protein GAI-like
SwissprotQ8S4W71e-152GAI1_VITVI; DELLA protein GAI1
TrEMBLA7U4T40.0A7U4T4_SPHPA; DELLA protein
STRINGPP1S12_244V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-131GRAS family protein