PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0070s0082.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LFY
Protein Properties Length: 272aa    MW: 29952.1 Da    PI: 8.094
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0070s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY40.25.7e-1316823349114
               FLO_LFY  49 r...eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavr 114
                               +le +f+++Gvr  tvaki+e+Gft +t+     +el  l++s+ +  ++ l +Ge +Gik a +
  Sphfalx0070s0082.1.p 168 MspiDLETFFEGFGVRPETVAKIKEMGFTGQTFTSNL-DELPSLLESIKQ--HCHLTLGEEWGIKGAAK 233
                           04449***************************98765.589999999998..567889*******9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.0E-8172233IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVKVKGVEWN HVVVLKEPEK HGMATLVRCA HCEKEFQGNA MRIRAHLLGN KRAAGVSGCP  60
SCPAEAREEL RIIDQAKSLT KRKRETRSSR TTRGTTSSAS DHSLDSAQQQ QQQHVDLMAS  120
LQNGERTTTT TTTTTTAVEH AFKSMIFQAG GLPVNFVNLS PFKPVPVMSP IDLETFFEGF  180
GVRPETVAKI KEMGFTGQTF TSNLDELPSL LESIKQHCHL TLGEEWGIKG AAKKLQKDHL  240
PVFTQPDVEK WPEPENGTAN NCKEVLCISQ S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369664.11e-132uncharacterized protein LOC112279448
TrEMBLA0A2K1KTT21e-132A0A2K1KTT2_PHYPA; Uncharacterized protein
STRINGPP1S140_156V6.11e-102(Physcomitrella patens)