PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0105.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 485aa    MW: 53738.4 Da    PI: 4.663
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-36351262102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sws+ +nsfvv+++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g 
  Sphfalx0067s0105.1.p  35 FLTKTYDMVNDAATDTIVSWSKGNNSFVVWNPPEFSQDLLPKYFKHNNFSSFVRQLNTYGFHKVDPDR---------WEFANERFVRGG 114
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           +ell++i+rkk 
  Sphfalx0067s0105.1.p 115 RELLREIRRKKP 126
                           *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3928118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6131124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3531124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVPTQFGMNS EISLLPDAPA QPPMDGLQSN APPPFLTKTY DMVNDAATDT IVSWSKGNNS  60
FVVWNPPEFS QDLLPKYFKH NNFSSFVRQL NTYGFHKVDP DRWEFANERF VRGGRELLRE  120
IRRKKPATHS QQQQQQHDAD GALAPFTEVE KLGLEKQIEM LKRDKSVLLL ELVRLQEQQQ  180
NTEHELQVMG QHLQVTEQRQ HQIMAFLAKA VQTPGFLAHL VSQNGMATAA RRKRRLQKED  240
DGGEVEDSSD PPTPTDGQII TIQTKGEVLS QILQLLSPSD ASIPAIDNHH LQSLLKDYNS  300
ALAGDEGNNL NQQSGVTLMD VSTSGTEQLQ SEPVLTDLGS NEGIVQLPSS PTSDVARVAG  360
SDPMEPGSRS CQSGTRDLRD SNSDSIDLNS RGPGVSTEVE DVSSSVNSQA VVPRTNDVFW  420
EQYLTEEPEN TTNCNSETNN SQKSEDKAWE YTRANGRVPQ ARNWLESRPN VEISSHQMGQ  480
LAPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231712413129Heat shock factor protein 1
5d5v_B2e-231712413129Heat shock factor protein 1
5d5v_D2e-231712413129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.11e-134heat stress transcription factor A-1b-like
TrEMBLA0A2K1LAL81e-132A0A2K1LAL8_PHYPA; Uncharacterized protein
STRINGPP1S249_84V6.11e-133(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.19e-69heat shock factor 1