PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0032s0107.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 517aa    MW: 56936.3 Da    PI: 4.3762
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0032s0107.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34531442102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++ ++sws+ +nsfvv+++  f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Sphfalx0032s0107.2.p  53 FLTKTYDMVDDPATDAIVSWSTGSNSFVVWNPPGFSQELLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGR 132
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           +ell+ i+r+k 
  Sphfalx0032s0107.2.p 133 RELLRGIHRRKP 144
                           *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3846136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-6049142IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3449142IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.8E-205376IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3053142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-20104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MVSQGMKSDT KWPSLEESME QVQFASTSDS LPLSSATVPQ PLDGLQNAAP PPFLTKTYDM  60
VDDPATDAIV SWSTGSNSFV VWNPPGFSQE LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR  120
WEFANECFLR GRRELLRGIH RRKPASQAQQ LQPQQQGEQG ILGPTLEIGK VGLEGEIETL  180
KRDKNVLMLE LVRLRQQQQS TEQDLQVMGQ RLQVTEQRQQ QMMTFLAKAM QNPAFLAQLM  240
QQTESNKRLA VTVRKKRRLP KHGESEEDSL NADSPPDGQM VTFQPNGTGE PNGTRSMLMQ  300
FWNILEASSP NHDSIPLETM FRDISSGTSV PEVNTLNRHS GVTLTEMQLS GLPDTLPGNV  360
VVTDVPDKSV LRISPSPTMH IPRLEGGHTV ESSDKSSRSD AQDNGEENDD SMEVNGEGFT  420
EEVSSNVGSP ALSLGANDIF WEQFLTETPD SPVASTDPDM DAEGPSETGA LLMDSTVDGT  480
DVFADAIGGG HPQAKDWWSK ENVDELSTQM GQLAPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-275114218120Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.10.0heat stress transcription factor A-1b-like
TrEMBLA0A2K1LAL80.0A0A2K1LAL8_PHYPA; Uncharacterized protein
STRINGPP1S249_84V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-91heat shock factor 3