PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0024s0149.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 480aa    MW: 52604.1 Da    PI: 6.6308
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0024s0149.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1678137155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  ++n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Sphfalx0024s0149.1.p  78 SIYRGVTRHRWTGRYEAHLWDkTTWNEtqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 137
                           57*******************666666656446*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-1778146IPR016177DNA-binding domain
PfamPF008471.3E-1278137IPR001471AP2/ERF domain
PROSITE profilePS5103220.08679145IPR001471AP2/ERF domain
SMARTSM003808.4E-2679151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1579146IPR001471AP2/ERF domain
PRINTSPR003675.2E-58091IPR001471AP2/ERF domain
PRINTSPR003675.2E-5127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MEPTEMKLKG PTESGSEEVV TLMHSRGEVG EAAATQEEHQ QQQQQNRGLK RSRRESRGSS  60
AKERISKMPP CEAGKRSSIY RGVTRHRWTG RYEAHLWDKT TWNETQNKKG KQVYLGAYDD  120
EEAAARAYDL AALKYWGPGT LINFPVTDYS RDVDEMQAFS REEYLASLRR KSSGFSRGAA  180
AKYRAAAGGS TIAAAAKHSP SARWEARIGR VLGNKYVYLG NPSSSCWAEE SPSTSFEAAT  240
EYRGLNAMTN FDLTRYLRWL RPKQSTIPPD ATHHEVDEES PKKRDEFSSS PPGGAGNQSP  300
SEEYQSQAWP GDVSEPYQFP SLGVKPAPGT SAAAAACRSS SSLSALSLLQ QSSIYRTMRE  360
RASALSSPSE ILEVVGMPNI DSHIQYQANH QDCCYYNKDG DGAGGAPPEM YLHHHQNLHT  420
DMGFPYSQAG GPPAIAAAAA AAMPVVTTQD DGAIVICDSQ DQAYWEPFVQ HFGLQQLAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652396.16e-86PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
TrEMBLW8VUD71e-106W8VUD7_SELML; AP2 type transcription factor
STRINGPP1S14_439V6.11e-117(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-62AP2 family protein