PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0191.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 423aa    MW: 47016.7 Da    PI: 5.0432
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3481.6e-106444191373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsev 87 
                           l+elL ecA+av s+d ela+  +  l  +  s +gd+++R+a+yft ALa+++++ ++++++  l+  + +   s+e l+a+ ++++v
  Sphfalx0023s0191.1.p  44 LKELLKECAQAVLSNDWELAHDRIRCLLGNqLSAQGDSFERVASYFTAALATHISKaTGTQISLPLALVQPP--GSDELLTAYLALNQV 130
                           5789*****************98877654449************************6666777666555555..799999********* PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesgskeeleetgerLakfAeel 172
                           +P+++f+hltaNqa+lea++ge  +Hi+D+di +GlQWp+++qaL   R+   +g p+l iTg+g+    +++ le tg+rL +fA+++
  Sphfalx0023s0191.1.p 131 TPFVRFAHLTANQALLEALDGEWYLHIVDLDIVHGLQWPPFMQALVdVRAdqgAGLPQLCITGIGK----DRQVLEMTGRRLVSFAQSI 215
                           *********************************************96566877889**********....******************* PP

                  GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                           g+pfef +l++++l++l++ +Lr+++gEalaVn++lqlh+llde+++ +   + +L ++ sl+P+vv+++e+ea++      + f++al
  Sphfalx0023s0191.1.p 216 GLPFEFIPLIHQNLDSLRPTMLRLRSGEALAVNCMLQLHTLLDEEGTGAL--EFFLGMLHSLNPRVVTLAEREANT------NPFADAL 296
                           ******************************************99988777..89*********************9......56999** PP

                  GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvac..ega.......errerhetlekWrerleeaGFkpvplsekaakqaklll 341
                           ++y  lf+slea+lpr+s er+ vE+ ++ +ei+n+va+  eg+       +r+ r +++ +Wr  +e+aGF+ +p s++a +qa+lll
  Sphfalx0023s0191.1.p 297 DHYKFLFESLEATLPRTSLERTQVEQLWFWKEISNIVAAtrEGQessssldSRVVRYQKFDQWRIFMETAGFQLLPTSKFALDQARLLL 385
                           *************************************973333322222225889********************************** PP

                  GRAS 342 rkvk.sdgyrveee.sgslvlgWkdrpLvsvSaW 373
                           r ++ s+gyr+ e+  g+l+lgWk+ pL++vS+W
  Sphfalx0023s0191.1.p 386 RLHYpSEGYRLVEDdAGCLLLGWKNDPLFAVSSW 419
                           **********8865389999************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.55418398IPR005202Transcription factor GRAS
PfamPF035145.4E-10444419IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MLGSSDSHGL APTEPVEHGR SDLPSRGQIP GRIDLSCSDG LKQLKELLKE CAQAVLSNDW  60
ELAHDRIRCL LGNQLSAQGD SFERVASYFT AALATHISKA TGTQISLPLA LVQPPGSDEL  120
LTAYLALNQV TPFVRFAHLT ANQALLEALD GEWYLHIVDL DIVHGLQWPP FMQALVDVRA  180
DQGAGLPQLC ITGIGKDRQV LEMTGRRLVS FAQSIGLPFE FIPLIHQNLD SLRPTMLRLR  240
SGEALAVNCM LQLHTLLDEE GTGALEFFLG MLHSLNPRVV TLAEREANTN PFADALDHYK  300
FLFESLEATL PRTSLERTQV EQLWFWKEIS NIVAATREGQ ESSSSLDSRV VRYQKFDQWR  360
IFMETAGFQL LPTSKFALDQ ARLLLRLHYP SEGYRLVEDD AGCLLLGWKN DPLFAVSSWN  420
AV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-625042025379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377672.11e-145scarecrow-like protein 18
RefseqXP_024377674.11e-145scarecrow-like protein 18
RefseqXP_024377675.11e-145scarecrow-like protein 18
RefseqXP_024377676.11e-145scarecrow-like protein 18
RefseqXP_024377677.11e-145scarecrow-like protein 18
TrEMBLA0A2K1KFX51e-144A0A2K1KFX5_PHYPA; Uncharacterized protein
STRINGPP1S240_118V6.11e-145(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-80GRAS family protein