PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0159.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LFY
Protein Properties Length: 242aa    MW: 27099.1 Da    PI: 6.964
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0159.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY1111.8e-34713138153
               FLO_LFY  38 eaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee.... 122
                           +a+++ a+++ r+l+elfk+yG+r +t+a i+++GftvstL++mkd+e+d ++ks++e ++l+ll+Ge++Gik+avra+rr l++    
  Sphfalx0011s0159.1.p   7 KAMTTLASKESRRLKELFKDYGLRPATIALISKMGFTVSTLIHMKDDEVDFVIKSIMEDYHLELLIGEQFGIKSAVRAKRRLLDQelew 95 
                           345556677799*********************************************************************99997777 PP

               FLO_LFY 123 ..eeaekkrrkll.sedeetaldalsqeg..lseep 153
                              +a+++rr ++ s  + +al   s eg  l +ep
  Sphfalx0011s0159.1.p  96 qrLHANSRRRCTVdSFASVSALALPSIEGhsLVREP 131
                           763344555544423333445555555652244444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.1E-246111IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSSNNPKAMT TLASKESRRL KELFKDYGLR PATIALISKM GFTVSTLIHM KDDEVDFVIK  60
SIMEDYHLEL LIGEQFGIKS AVRAKRRLLD QELEWQRLHA NSRRRCTVDS FASVSALALP  120
SIEGHSLVRE PSRVQKRNHM PPELLTQRLP LLSDEVPMLG QGDTPLSMTG LVALADVSSD  180
GDIDSGWENF HPQNQKLKRK WISSGPEEIV DDRLKDMHLV PGLLEGFMKN GHSTGFCEFT  240
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ude_A3e-211298388GINLFY PROTEIN
4ude_B3e-211298388GINLFY PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-13floral meristem identity control protein LEAFY (LFY)