PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0033.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 258aa    MW: 28366 Da    PI: 7.1682
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.2e-3961071101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++apyf a+q +++fa+vhk+FGasnv kll ++p  +r da+ ++ yeA+ar++dPvyG+v++i++lqqq++
  Sphfalx0010s0033.1.p   6 PCGACKFLRRKCVRGCIFAPYFGADQgAARFAAVHKIFGASNVAKLLMHIPMPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVA 94 
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                           +l+ael++++++l
  Sphfalx0010s0033.1.p  95 SLQAELDMVQAQL 107
                           ********99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0745107IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-386104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSSGAPCGAC KFLRRKCVRG CIFAPYFGAD QGAARFAAVH KIFGASNVAK LLMHIPMPRR  60
CDAVLTISYE AQARLSDPVY GCVATIFALQ QQVASLQAEL DMVQAQLADR HAAAAAHQLQ  120
QQQQHQQQQQ QQQMGGLSFS PGQAHDYMQQ QFDQSSELNM QQPGPTSALS MSLASSSDSA  180
HNYLRIKEEE TRPYHAGMQQ HDFQYGIMLS NPLEPMPHQA LIDSMERPRS GALSDHQPAD  240
HDGELQALAH SLLRRPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S261_2V6.16e-88(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-58LOB domain-containing protein 20