PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0027.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 572aa    MW: 62120.6 Da    PI: 8.3743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.7e-35261172102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y +++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+
  Sphfalx0008s0027.1.p  26 FLTKTYYLVNDPATDDIVSWGEDNTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGE 105
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i+r+ks
  Sphfalx0008s0027.1.p 106 KQLLCEIHRRKS 117
                           **********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3719110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-5922115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSLSFDTTEA VSLLSYDCHR SVPAPFLTKT YYLVNDPATD DIVSWGEDNT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FRRGEKQLLC EIHRRKSLQS  120
HGSNTAGSGA QQSRSHSPSI SNEDVQTWSP LSGTSPLSSP SRPHHLLLVS TPSAAAPAGA  180
ATSTHAAVFM CDENERLRKD NSLLLSEVSR LRRLYDESMV ILQHQSKSSA LQDPAWIRSR  240
IISAAAGGVL TGHAASGEAA GRLGTCKFIR DSVLAEQLDT AARKQQIREL SLQVMSRSNA  300
EQLHAISTSG AGPGALPPLR APSTLDSTTR AGLMQQQQLH VRQSSPAAYL IAAAQSTRDS  360
ATPKASTLSF VDGKLREIAS SANATNNNNK LLMMKTKEES AAAAGKINTP IMNTPKLFGV  420
PLRLQESDCN AGDHINDPAT AAAAGTADDR HHQHLHRKRP RGSNINYWEY DAEAAADQAD  480
GVELFSSKQQ QLLLDTKTSG PGVPVLKQLQ IRPAAGPPVT GTYSAAVIKP ELGSLENSLQ  540
PMLQTSTTAS TSVESTPWLQ ICATRDERVY I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-23221157110Heat shock factor protein 1
5hdn_A2e-23221157110Heat shock factor protein 1
5hdn_B2e-23221157110Heat shock factor protein 1
5hdn_C2e-23221157110Heat shock factor protein 1
5hdn_D2e-23221157110Heat shock factor protein 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-62heat shock transcription factor B4