PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 687aa    MW: 74982.5 Da    PI: 6.0782
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.61.4e-1113226851373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevs 88 
                           lv+lLl+cAeav++++ +la+ +L rls l+ ++g++mqRlaa+f+ ALaar+++ + s+ y+ l+   +    +s+ l a+++++e +
  Sphfalx0003s0080.1.p 322 LVHLLLACAEAVANEQVSLAHVILVRLSSLVVQRGNTMQRLAAVFMDALAARVMKaTDSGPYRGLAGDISV--PVSDMLEAYSVLYEST 408
                           68*****************************************************5556667666555554..39************** PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                           P+ kf+hlt+Nq +l+ave+e+++H++D+di +G+QWpa+lqaLa Rp+gpp++R+T++g+    s + le  +e+L+++A++l+vpfe
  Sphfalx0003s0080.1.p 409 PLGKFAHLTCNQILLDAVERENCIHVLDLDIWHGMQWPAFLQALALRPGGPPRVRMTAIGA----SFNDLEVAREKLQEYATKLQVPFE 493
                           *************************************************************....99********************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f + +++rl ++++ + ++++gE+l++n  +qlhrll    + +++ +++L  ++sl+P+vv ++e++ dhns+ Fl+rf+e+l+yysa
  Sphfalx0003s0080.1.p 494 FCP-IVERLVNFHVGMVQLHEGEVLVINTFIQLHRLL---IKGDEKFQQFLCDLRSLNPRVVALAENDGDHNSPVFLHRFVECLRYYSA 578
                           ***.79*******************************...66666678***************************************** PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           +fd+++++l ++s +  k+E+ + g++i+n++aceg++r+erhe++ +W++r+e+aGF+ v++s+ a +qa+lll+ +   g+++++e+
  Sphfalx0003s0080.1.p 579 IFDAFDTSLQHNSLALLKIEQIFSGQKIRNIIACEGSARVERHESMLNWSRRMEAAGFRGVQISTCAFSQAHLLLSLYFHSGFTLNSEH 667
                           ***************************************************************************************** PP

                  GRAS 356 gslvlgWkdrpLvsvSaW 373
                           g lv gW +  L+ vSaW
  Sphfalx0003s0080.1.p 668 GYLVAGWYNVGLMGVSAW 685
                           ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.128296666IPR005202Transcription factor GRAS
PfamPF035144.9E-109322685IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MATLARSNTA ADGELASIFG LQHHNMHATS AHHATGTAVD CLVQNNCMSS MQEESFYRES  60
RYPFTRSSPS SCDNKCGSTS ENAMMLLGNK SSKVVVVQDP HPLHHHAYSS SQGGGGSPSP  120
GALTQGSGSP FELLRAISPF TPAALIRSDR EPIFGDSIQQ ASSPDGLDGL LRTMQQQQAG  180
GLEHLTVGFA TPSQHFDHDT PPPPPPSSWT DDHMGGVGFQ GRESDLYHLG TVVHQEPTAL  240
QQNGSWMVPD GSNGWLCANW NASGSGGGAQ NHNSMTILQQ QQQQQQQQQN CGLEEEDVNA  300
DSGRGMIPEQ SPSSMGATGL QLVHLLLACA EAVANEQVSL AHVILVRLSS LVVQRGNTMQ  360
RLAAVFMDAL AARVMKATDS GPYRGLAGDI SVPVSDMLEA YSVLYESTPL GKFAHLTCNQ  420
ILLDAVEREN CIHVLDLDIW HGMQWPAFLQ ALALRPGGPP RVRMTAIGAS FNDLEVAREK  480
LQEYATKLQV PFEFCPIVER LVNFHVGMVQ LHEGEVLVIN TFIQLHRLLI KGDEKFQQFL  540
CDLRSLNPRV VALAENDGDH NSPVFLHRFV ECLRYYSAIF DAFDTSLQHN SLALLKIEQI  600
FSGQKIRNII ACEGSARVER HESMLNWSRR MEAAGFRGVQ ISTCAFSQAH LLLSLYFHSG  660
FTLNSEHGYL VAGWYNVGLM GVSAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6832968626379Protein SCARECROW
5b3h_A5e-6832968625378Protein SCARECROW
5b3h_D5e-6832968625378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388062.11e-146DELLA protein RGL1-like
RefseqXP_024388063.11e-146DELLA protein RGL1-like
RefseqXP_024388065.11e-146DELLA protein RGL1-like
RefseqXP_024388066.11e-146DELLA protein RGL1-like
RefseqXP_024388067.11e-146DELLA protein RGL1-like
TrEMBLA0A176WU481e-159A0A176WU48_MARPO; Uncharacterized protein
TrEMBLA0A2R6VXY41e-161A0A2R6VXY4_MARPO; Uncharacterized protein
STRINGPP1S31_35V6.21e-145(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-78RGA-like 2