PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0196.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 793aa    MW: 85778.6 Da    PI: 7.1864
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0196.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.4e-14271330155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Sphfalx0000s0196.2.p 271 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 330
                           78*******************655454478446**********99*************98 PP

2AP245.32.1e-14375424355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Sphfalx0000s0196.2.p 375 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 424
                           9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-11271330IPR001471AP2/ERF domain
CDDcd000188.38E-20271340No hitNo description
SuperFamilySSF541713.07E-16271340IPR016177DNA-binding domain
SMARTSM003802.5E-27272344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-15272339IPR001471AP2/ERF domain
PROSITE profilePS5103219.006272338IPR001471AP2/ERF domain
PRINTSPR003677.5E-6273284IPR001471AP2/ERF domain
CDDcd000181.28E-22373434No hitNo description
SuperFamilySSF541712.62E-17373434IPR016177DNA-binding domain
SMARTSM003802.3E-32374438IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17374433IPR001471AP2/ERF domain
PROSITE profilePS5103219.282374432IPR001471AP2/ERF domain
PfamPF008472.0E-9375424IPR001471AP2/ERF domain
PRINTSPR003677.5E-6414434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MQGPSTSSAE TRDGPKLEDF LGGKSLGGEY SDSDHHSHHH PQLEGLYYNA AHGAASFQEG  60
QARINVNLPY THSGTGGSGA LLRDMALNST FHLAYTSAVS QQDQSSLTLN HLNHCYEANE  120
QQLQESNLLA QSGSHLRHVV QRTALDQQQS DCSLQMPQGS SLGLKSWFRH QADADSKAGA  180
APLELQVRHG SSLSAALASW QPLSLSMSAA SSHVTDHAVD QQLVLPGQLQ VTESSQAAAP  240
ESRKRGAGRM GAGKDGLPAR KATDTFGQRT SVYRGVTRHR WTGRYEAHLW DNSCRKEGQT  300
RKGRQVYLGG YDKEDKAARA YDLAALKYWG SSTTINFPLS TYEAELEVMK NMTRQEYVAS  360
LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTYSTQEE AAEAYDIAAI  420
KFRGVDAVTN FDMSRYDPQK ICAAAINGQE ISFKCKRADQ KMITELVSTP SSDGVTCVGD  480
KNHWPVTSSL ATGTVPDSRI ELMRSDQDHL SVAPCGLSKN LLEWQMLYQQ QTVGHHEHER  540
TSWGHATGQD TCSTANEIQG AAGQESTCAH LGFGLDTLWA PASHASSKYN RSTVPSNGTL  600
PRNLIGLDIP PQEHGGGESP CTAGSSGLMN HHHGLPSSAA SLLSSSPGYQ GRPGQQTMQP  660
AGYEHVGTAT TDQQLQTSDN RAIRSSGLAY NHGSRDRSDV HMESPNNSIG ESEEASSKNS  720
TFDRVLPGDL SRNLLFSSVI TSPVKMNPSY LANPSATWTG ISNPLAIPML LAQPANLSHM  780
GSGPIFAHSW TE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG5EM170.0G5EM17_PHYPA; AP2-like ethylene-responsive transcription factor
STRINGPP1S131_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-109AINTEGUMENTA-like 5