PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0196.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 875aa    MW: 94831.4 Da    PI: 6.9758
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0196.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.7e-14353412155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Sphfalx0000s0196.1.p 353 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 412
                           78*******************655454478446**********99*************98 PP

2AP245.22.4e-14457506355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Sphfalx0000s0196.1.p 457 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 506
                           9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.17E-20353422No hitNo description
SuperFamilySSF541713.53E-16353422IPR016177DNA-binding domain
PfamPF008472.9E-11353412IPR001471AP2/ERF domain
PROSITE profilePS5103219.006354420IPR001471AP2/ERF domain
SMARTSM003802.5E-27354426IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-15354421IPR001471AP2/ERF domain
PRINTSPR003679.0E-6355366IPR001471AP2/ERF domain
CDDcd000181.43E-22455516No hitNo description
SuperFamilySSF541712.94E-17455516IPR016177DNA-binding domain
SMARTSM003802.3E-32456520IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17456515IPR001471AP2/ERF domain
PROSITE profilePS5103219.282456514IPR001471AP2/ERF domain
PfamPF008472.3E-9457506IPR001471AP2/ERF domain
PRINTSPR003679.0E-6496516IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MRSSSDDHES LCIMEALSRS QNSVDHWQLQ ARAIQAADTS HGIRETQSHN LFAVDQLSRL  60
TVNTGAVDHQ FQGASPGAHY DHMQGPSTSS AETRDGPKLE DFLGGKSLGG EYSDSDHHSH  120
HHPQLEGLYY NAAHGAASFQ EGQARINVNL PYTHSGTGGS GALLRDMALN STFHLAYTSA  180
VSQQDQSSLT LNHLNHCYEA NEQQLQESNL LAQSGSHLRH VVQRTALDQQ QSDCSLQMPQ  240
GSSLGLKSWF RHQADADSKA GAAPLELQVR HGSSLSAALA SWQPLSLSMS AASSHVTDHA  300
VDQQLVLPGQ LQVTESSQAA APESRKRGAG RMGAGKDGLP ARKATDTFGQ RTSVYRGVTR  360
HRWTGRYEAH LWDNSCRKEG QTRKGRQVYL GGYDKEDKAA RAYDLAALKY WGSSTTINFP  420
LSTYEAELEV MKNMTRQEYV ASLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK  480
DLYLGTYSTQ EEAAEAYDIA AIKFRGVDAV TNFDMSRYDP QKICAAAING QEISFKCKRA  540
DQKMITELVS TPSSDGVTCV GDKNHWPVTS SLATGTVPDS RIELMRSDQD HLSVAPCGLS  600
KNLLEWQMLY QQQTVGHHEH ERTSWGHATG QDTCSTANEI QGAAGQESTC AHLGFGLDTL  660
WAPASHASSK YNRSTVPSNG TLPRNLIGLD IPPQEHGGGE SPCTAGSSGL MNHHHGLPSS  720
AASLLSSSPG YQGRPGQQTM QPAGYEHVGT ATTDQQLQTS DNRAIRSSGL AYNHGSRDRS  780
DVHMESPNNS IGESEEASSK NSTFDRVLPG DLSRNLLFSS VITSPVKMNP SYLANPSATW  840
TGISNPLAIP MLLAQPANLS HMGSGPIFAH SWTE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG5EM170.0G5EM17_PHYPA; AP2-like ethylene-responsive transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-108AINTEGUMENTA-like 5