PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family E2F/DP
Protein Properties Length: 382aa    MW: 41816.9 Da    PI: 4.68
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-2761126171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Sphfalx0000s0005.1.p  61 RYDSSLGLLTKKFVNLIKQAEDGVLDLNKAADTL---HV--QKRRIYDITNVLEGVGLIEKKLKNRIQWKG 126
                           6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-2957127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.4E-3561126IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-1761124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.3E-2563126IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.65E-47137242No hitNo description
SuperFamilySSF1440744.97E-31140242No hitNo description
PfamPF164212.3E-32142241IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAMNGWNGFS SLDASPGPTP TGRRGSRSKT AKQLKNAPQT PGSSAAGSPT TSAPTPTSTC  60
RYDSSLGLLT KKFVNLIKQA EDGVLDLNKA ADTLHVQKRR IYDITNVLEG VGLIEKKLKN  120
RIQWKGVGVA RPEAAEDDEA ALQAEVKELL MVEQSLDDRI REMRERLRTL SENESNKKWL  180
YVTDEDIKSL SCFQNETLIA IKAPHGTTLE VPDPDEAVEY PHRRFQILLR STMGPIDVYL  240
VSRFEGKFEE MNTNDAALDT TSSAMAMSRQ HETTPMMQEL GRSLSELGPL GNHETSSSPD  300
ATGPQNDPAC GIMKITPVET DSDYWFLSDA SVGITDIWKN DPSNAMWDEM VRLNSEFGLG  360
EIGSPCPHTP SGSTLEVEPV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-2856128275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001759638.10.0predicted protein
SwissprotQ9FNY01e-119E2FA_ARATH; Transcription factor E2FA
TrEMBLQ8GU410.0Q8GU41_PHYPA; Predicted protein
STRINGPP1S38_356V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-108E2F transcription factor 3