PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G209100.1.p
Common NameSb10g025590, SORBIDRAFT_10g025590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 349aa    MW: 37825.7 Da    PI: 10.1732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G209100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30190249159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dgy+WrKYGqK+ k++++pr+YYrC++a +Cpvkkkv+rsa+d +v++ tYegeHnh 
  Sobic.010G209100.1.p 190 VKDGYQWRKYGQKVTKDNPCPRAYYRCSFApSCPVKKKVQRSADDSTVLVATYEGEHNHG 249
                           58***************************99****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934185251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-29189251IPR003657WRKY domain
SuperFamilySSF1182901.57E-26189251IPR003657WRKY domain
SMARTSM007741.4E-35190250IPR003657WRKY domain
PfamPF031062.3E-25191248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDPWVGHQPS LSLDLNVGLL PTARPAVPAK STKVLVQENF MAVKKDNREV EKLEAELRRV  60
GEENRRLSEM LRAVVAKYTE LKGQVDDMVV ATANHTGSST SEGGSAASPS RKRIRSAGDN  120
SLDTAAQHHH RRKPSPPLAA AVAAHDQTEC TSAAVSVTAA AFRRAVREEC RPKVSRRYVH  180
ADPADLSLVV KDGYQWRKYG QKVTKDNPCP RAYYRCSFAP SCPVKKKVQR SADDSTVLVA  240
TYEGEHNHGQ PPQHDGGRAA RSTATAQAQV ASEAAVRPVA APLPLQHPHQ QQKQKQKQEA  300
ATTVPSSEVA RKNLAEHMAV TLTRDPGFKA ALVSALSGRI LELSPTRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-221892521375WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437362.10.0hypothetical protein SORBIDRAFT_10g025590
TrEMBLC5Z6T40.0C5Z6T4_SORBI; Putative uncharacterized protein Sb10g025590
STRINGSb10g025590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-45WRKY DNA-binding protein 40