PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G202700.3.p
Common NameSb10g025053, SORBIDRAFT_10g025053
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 395aa    MW: 43563.7 Da    PI: 8.5475
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G202700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-18114163155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Sobic.010G202700.3.p 114 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 163
                           78*******************......55************************997 PP

2AP243.11e-13206256155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Sobic.010G202700.3.p 206 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTETEAAQAYDKAAIKCYG 256
                           789*******.7******77733....25**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16114172IPR016177DNA-binding domain
PfamPF008477.3E-10114163IPR001471AP2/ERF domain
CDDcd000189.16E-11115171No hitNo description
SMARTSM003801.3E-30115177IPR001471AP2/ERF domain
PROSITE profilePS5103217.833115171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17115171IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17206265IPR016177DNA-binding domain
CDDcd000182.47E-25206266No hitNo description
PfamPF008472.8E-9206256IPR001471AP2/ERF domain
PROSITE profilePS5103215.791207264IPR001471AP2/ERF domain
SMARTSM003805.2E-34207270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17207264IPR001471AP2/ERF domain
PRINTSPR003673.0E-6208219IPR001471AP2/ERF domain
PRINTSPR003673.0E-6246266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAATRRAFFH YCGVDGIARA APGEAELLPQ VGGRRPEEGA SSSMIFGFPM PVVPGRPAAA  60
VTQQFFPATA AAAPAQQQAT TEEQCHVPAG FSAAEQWVRS ASRKSRRGPR SRSSQYRGVT  120
FYRRTGRWES HIWDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVNADINF ALDDYKDEMK  180
KMKSFSKEEF VQVLRRQGAG FVRGSSRFRG VTQHKCGKWE ARIGQLMGKK YVYLGLYDTE  240
TEAAQAYDKA AIKCYGKEAV TNFDAQGYDN ELQLQLQSWD DGELDLELSL SCSGSDPPST  300
VAVDASFSSA PGSKQRTMAL TLDLPAAEET SASYPHRSIL TRPPPPTAAG MFWRPADDHV  360
HVQHHPHPGI GSRDDDNDTQ LRMQLQMVRR SYHH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.52576e-52embryo| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G202700.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659046.11e-171glossy15 isoform X1
SwissprotA0A0N7KMH01e-132AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A1W0VU220.0A0A1W0VU22_SORBI; Uncharacterized protein
STRINGSb10g025053.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-73AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]