PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G115450.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 174aa    MW: 18987.7 Da    PI: 7.415
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G115450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.82e-0770167197290
                  GRAS 197 kpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflea...leyysalfdsleaklprese 280
                           +p+ +l+V + ++l++l d+++ ++   + d+vL  +++++  +++++  +  + ++sFl+rf  +    ++  alfd l+a l+  se
  Sobic.010G115450.1.p  70 DPDMVLVVDSLFKLETLADDNLVMDRasPLDSVLGNIRRMRQAMFTHSVVNGLC-GNSFLTRFRPSgrrSSTSQALFDVLDAMLSWGSE 157
                           457789**************9988776699*****************9999888.679*****987222567789************** PP

                  GRAS 281 erikvErell 290
                           + +++E+ + 
  Sobic.010G115450.1.p 158 QCRVLEQDVC 167
                           *999999854 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.8E-570167IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MADEAAMSNS KEARRRSHAH AAGELRAGGG RAVCIADVGR LQRLAHCFVE ALEAREVAVA  60
RWDAVRVGRD PDMVLVVDSL FKLETLADDN LVMDRASPLD SVLGNIRRMR QAMFTHSVVN  120
GLCGNSFLTR FRPSGRRSST SQALFDVLDA MLSWGSEQCR VLEQDVCVVN VVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G115450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450074.19e-37scarecrow-like protein 34
TrEMBLA0A1W0VSG61e-121A0A1W0VSG6_SORBI; Uncharacterized protein
STRINGSb10g010016.12e-73(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-06GRAS family protein