PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G111800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 489aa    MW: 55095.4 Da    PI: 4.9186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G111800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.7e-33922301128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                           lp+G++F+P+d+el+++ L+k+ +++      +++  +i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++ 
  Sobic.010G111800.2.p  92 LPKGVKFDPSDQELIWHLLAKHGKSDIkphpfIDE--FIPTVEedegICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRKINt 177
                           799************98888765444344544222..2443322234**********.667778899******************7554 PP

                   NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                              + +W++tgk+k+vl  +g++ g kk++v+y    +  k+ekt+Wvmh+y+l
  Sobic.010G111800.2.p 178 vdaDVRWHKTGKTKPVLL-DGKQLGSKKIMVLYMSpaKGGKAEKTNWVMHQYHL 230
                           566889************.999***********6522666778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3876249IPR003441NAC domain
PROSITE profilePS5100531.98492249IPR003441NAC domain
PfamPF023652.0E-1493230IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MPRRFFFFAV DGSSGQMMTF LYFGFNDKED MSTVRMKTTW IIDSQRFATK IKNASGSSDP  60
SKQKWISNPS KECPKCSHVI DNSDVVHHWP GLPKGVKFDP SDQELIWHLL AKHGKSDIKP  120
HPFIDEFIPT VEEDEGICYT HPQKLPGVKQ NGSVSHFFHR TFKAYNTGTR KRRKINTVDA  180
DVRWHKTGKT KPVLLDGKQL GSKKIMVLYM SPAKGGKAEK TNWVMHQYHL GIGEDERDGE  240
YVVSKLFFQQ QFKPGDKNAQ ELTTSDDLES IAAEADLTDF TTLPADKHVG TIQVVHNSEH  300
NLNQVTTSDD LESMAAEADL PDFTTLPADK HVGTIQEVQN PEHNLYQVNR NCEINIEETV  360
VLPPSEKTED GDNPQSQDPK LWEGDSQFEL LDSQQLAEGL ALCDEFLLSQ SQTSCGGGDE  420
PRVTKPCLAA YAHLSTEDFK KDLEECQRLE PTDNTNLELD STNEFRLSQI EFSQDSFTTW  480
AVGKMTDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558620.0BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436832.10.0hypothetical protein SORBIDRAFT_10g009670
SwissprotQ6NQK21e-148NAC8_ARATH; NAC domain-containing protein 8
TrEMBLC5Z8F20.0C5Z8F2_SORBI; Putative uncharacterized protein Sb10g009670
STRINGSb10g009670.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82641016
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-150NAC family protein