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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G101100.1.p | ||||||||
Common Name | Sb10g008800, SORBIDRAFT_10g008800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 437aa MW: 48254.3 Da PI: 8.4231 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.2 | 5.6e-23 | 66 | 131 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+ +++ +++ l+++ak+L v +rRRiYDi+NVLe+++++ +++kn+++w g Sobic.010G101100.1.p 66 RKQKSLGLLCSNFVALYDREDVEVIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 131 79****************9999************...**..****************************87 PP | |||||||
2 | E2F_TDP | 80.5 | 1.5e-25 | 211 | 291 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e ++++k+RR+YDi+NVL++lnliek ++k+++rw g Sobic.010G101100.1.p 211 RKEKSLGLLTQNFVKLFLTMEVETISLDEAAKLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqadTRKPAFRWLG 291 79******************************************************************9999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.8E-26 | 62 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.41E-16 | 65 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.8E-28 | 66 | 131 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.3E-20 | 67 | 131 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.2E-23 | 208 | 292 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.9E-33 | 211 | 291 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 9.0E-21 | 212 | 291 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.46E-13 | 213 | 291 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MDAPAPAPAP GPFFSGAEST AAAAQASTTG AQPPPVDPQA HVPVQGAGAG SGSGVARGCR 60 HHAYSRKQKS LGLLCSNFVA LYDREDVEVI GLDDAAKRLG VERRRIYDIV NVLESVGILV 120 RRAKNRYTWL GFGGVPAALK ELKERALREM SGLPVLLPME DSSTANLSDD EDDEKLGDAD 180 EDAESEKLSQ SVDNTSDKPD APSCRLRSDH RKEKSLGLLT QNFVKLFLTM EVETISLDEA 240 AKLLLGEGHA ESNMRTKVRR LYDIANVLSS LNLIEKTQQA DTRKPAFRWL GQAKRKQENN 300 VMVALPPSRK AMPNKRAFGT DLTNMDNKRG KLDTSAENKV KLMQGAGNIV KTFERQLGQG 360 KRSDFVYGPF HPASAKKQET DDQTVKQQER KTIQDWENLA VSFRPQYQNQ ALNDLFGHYV 420 EAWKSWYLDL TRETRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 5e-38 | 65 | 283 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.8440 | 0.0 | callus| ovary| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728027 | 0.0 | KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436789.1 | 0.0 | hypothetical protein SORBIDRAFT_10g008800 | ||||
TrEMBL | C5Z7K6 | 0.0 | C5Z7K6_SORBI; Putative uncharacterized protein Sb10g008800 | ||||
STRING | Sb10g008800.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2474 | 16 | 34 | Monocots | OGMP3185 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-106 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G101100.1.p |
Entrez Gene | 8061495 |