PlantTFDB
Plant Transcription Factor Database
v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G101100.1.p
Common NameSb10g008800, SORBIDRAFT_10g008800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 437aa    MW: 48254.3 Da    PI: 8.4231
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.25.6e-2366131171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           rk+ksL+ll+++f++l+ +++ +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w g
  Sobic.010G101100.1.p  66 RKQKSLGLLCSNFVALYDREDVEVIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 131
                           79****************9999************...**..****************************87 PP
2E2F_TDP80.51.5e-25211291171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                           rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Sobic.010G101100.1.p 211 RKEKSLGLLTQNFVKLFLTMEVETISLDEAAKLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqadTRKPAFRWLG 291
                           79******************************************************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-2662132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.41E-1665130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-2866131IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-2067131IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-23208292IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.9E-33211291IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.0E-21212291IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.46E-13213291IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDAPAPAPAP GPFFSGAEST AAAAQASTTG AQPPPVDPQA HVPVQGAGAG SGSGVARGCR  60
HHAYSRKQKS LGLLCSNFVA LYDREDVEVI GLDDAAKRLG VERRRIYDIV NVLESVGILV  120
RRAKNRYTWL GFGGVPAALK ELKERALREM SGLPVLLPME DSSTANLSDD EDDEKLGDAD  180
EDAESEKLSQ SVDNTSDKPD APSCRLRSDH RKEKSLGLLT QNFVKLFLTM EVETISLDEA  240
AKLLLGEGHA ESNMRTKVRR LYDIANVLSS LNLIEKTQQA DTRKPAFRWL GQAKRKQENN  300
VMVALPPSRK AMPNKRAFGT DLTNMDNKRG KLDTSAENKV KLMQGAGNIV KTFERQLGQG  360
KRSDFVYGPF HPASAKKQET DDQTVKQQER KTIQDWENLA VSFRPQYQNQ ALNDLFGHYV  420
EAWKSWYLDL TRETRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-38652833228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.84400.0callus| ovary| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280270.0KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436789.10.0hypothetical protein SORBIDRAFT_10g008800
TrEMBLC5Z7K60.0C5Z7K6_SORBI; Putative uncharacterized protein Sb10g008800
STRINGSb10g008800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-106DP-E2F-like 1