PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G199300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 333aa    MW: 34726.3 Da    PI: 6.779
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G199300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.12.1e-2627128196
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 
                           +C++C+ lr++C+++C+++p++     p++q +++ +++k++G++ +l+l++a+p     +++++sl+yeA+ r+ +PvyGavg+++++
  Sobic.009G199300.1.p  27 SCNGCRALRKGCSDGCTIRPCLqwiksPEAQGNATHFLAKFYGRAGLLNLIAAAPAGAdCQAVFRSLLYEACGRIVNPVYGAVGLLWSG 115
                           6*****************************************************988769***************************** PP

                DUF260  84 qqqleqlkaelal 96 
                           q+  ++ ++e+a 
  Sobic.009G199300.1.p 116 QWPKCEDAVEAAF 128
                           **99999988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.30126133IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-2027126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVPMSGSGST SGTGGGGAAK THRMVTSCNG CRALRKGCSD GCTIRPCLQW IKSPEAQGNA  60
THFLAKFYGR AGLLNLIAAA PAGADCQAVF RSLLYEACGR IVNPVYGAVG LLWSGQWPKC  120
EDAVEAAFKG ELGVPVHVVH VDAPPPPLGA RLGPSSASYD IRHFAKDSDA AVAADLLRFA  180
RAAGRTGFKR GKGSPSYGSK AKLLKGNGEA TKNVRASPSG SPPLGQQQEV AKELEPMPMV  240
MEMELEHDGR RDEDNDHHLK GKGSKENTDV EAAAFHVIQG EAEPPLGNQV LVADQEEEVV  300
VPGLELALGF EPVPVVRQQP SGDQTGSSGL GL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.26604e-83callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G199300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441387.10.0uncharacterized protein LOC8067520
TrEMBLA0A1B6P9L00.0A0A1B6P9L0_SORBI; Uncharacterized protein
STRINGSb09g025700.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-56LOB domain-containing protein 41