PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G195000.1.p
Common NameSb09g025340, SORBIDRAFT_09g025340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 299aa    MW: 31249.1 Da    PI: 8.3201
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G195000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.32.4e-2959135371
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........s 71 
                           g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++         
  Sobic.009G195000.1.p  59 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQaqdlvahlP 135
                           78*************************************************************88888322222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.68860118IPR017887Transcription factor TCP subgroup
PfamPF036349.7E-2760123IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MISGNLTNEE LGAGCTKAEG PTAGSGAGAV VAKSPVLSSS RHWPPSTESR IVRVSRVFGG  60
KDRHSKVRTV KGLRDRRVRL SVPTAIQLYD LQDRLGLSQP SKVVDWLLDA AQHEIDKLPP  120
LQFPPQAQDL VAHLPPSMVA PFSNVAAAAD RAAAANASAA AMADGDKRHC HGGGIKGLMG  180
LNNSIGLVNA TMPLAHGLYY TPAGESWTTN GNNAAVHDHQ VSHHGTSPQT TVAHHSPFSS  240
LLSLAAPGPQ LVFYSPEGGG FAMKEAADHQ FPVDSLEHSQ GQLSLSSARS FLHPGNQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2065119155Putative transcription factor PCF6
5zkt_B5e-2065119155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G195000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563580.0EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440063.10.0transcription factor PCF8 isoform X1
RefseqXP_021304103.10.0transcription factor PCF8 isoform X1
TrEMBLC5Z0W30.0C5Z0W3_SORBI; Uncharacterized protein
STRINGSb09g025340.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5