PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G117700.2.p
Common NameSb09g018540, SORBIDRAFT_09g018540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 456aa    MW: 49655 Da    PI: 7.1262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G117700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.72.5e-80354483374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevs 88 
                           e++ +c +a+++g+  +a++ L  +s+l+s +gdp+qR+a+ f+eAL +r ++ + ++ly  l   + +++   +  + + +  f  ++
  Sobic.009G117700.2.p  35 EVMQHCINALATGNVLAANTGLVLMSTLSSAAGDPLQRVAFSFAEALGRRALQqMLPGLYGGLLRLDFPPQPpaVGYTCTTRLSFDALC 123
                           67889*******************************************99888799****999777776666434444444455***** PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           P+l+++  +aN+ I+ a+egee+vH++D++   + QW+ Ll+ +a Rp+g+p slR+T+v++    +++ l++  + L+  A++l++pf
  Sobic.009G117700.2.p 124 PLLRVAASAANHEIVTAMEGEEHVHVVDLGGASPNQWIELLHLFAVRPGGKPsSLRLTVVSE----EERLLSAASWLLHWEAARLHIPF 208
                           ************************************************887779********....99********************* PP

                  GRAS 177 efnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrll..................................desvsleserdev 227
                            fn++  + +rl   ++ ++ v p  gEala+ + lqlhrl                                   +++ ++    d++
  Sobic.009G117700.2.p 209 VFNPVrsHIDRLCPHDVASFGVVPggGEALAITSTLQLHRLIadvtssndlppaadsadhqhrgkkrkgkqpppppKHEITM---ADAL 294
                           ****8666667777799999*************************************************9988755555555...55** PP

                  GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                           L+++ +lsPkv+v++eqea+hn++s+ +r+ +a++yy+alf+ l + ++pr+s +r+ +Er ll++ei+++va  g++rrerhe ++ W
  Sobic.009G117700.2.p 295 LRVLCDLSPKVMVLTEQEANHNGGSLGDRVRNAFDYYAALFNDLeAGGAPRASADRAALERTLLRQEIMDIVARDGTSRRERHEGVMAW 383
                           ********************************************77889**************************************** PP

                  GRAS 316 rerleeaGFkpvplsek...aakqaklllrkvksdg...yrveeesgslvlgWkdrpLvsvSaWr 374
                            +r+++aGF+p++l+ +   a ++  ll  + +++g   y v +++ +++++ +  p++sv+aWr
  Sobic.009G117700.2.p 384 AQRMGMAGFQPMHLQVRrfdAFADPGLLALQLSMHGtlrYWVAQDNTCFIIYANMTPMFSVTAWR 448
                           *************98651114445445544444566666*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.2077422IPR005202Transcription factor GRAS
PfamPF035148.5E-7835448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMQQASMQWG AVAAPTVILP AFQQLDSNRI QLIKEVMQHC INALATGNVL AANTGLVLMS  60
TLSSAAGDPL QRVAFSFAEA LGRRALQQML PGLYGGLLRL DFPPQPPAVG YTCTTRLSFD  120
ALCPLLRVAA SAANHEIVTA MEGEEHVHVV DLGGASPNQW IELLHLFAVR PGGKPSSLRL  180
TVVSEEERLL SAASWLLHWE AARLHIPFVF NPVRSHIDRL CPHDVASFGV VPGGGEALAI  240
TSTLQLHRLI ADVTSSNDLP PAADSADHQH RGKKRKGKQP PPPPKHEITM ADALLRVLCD  300
LSPKVMVLTE QEANHNGGSL GDRVRNAFDY YAALFNDLEA GGAPRASADR AALERTLLRQ  360
EIMDIVARDG TSRRERHEGV MAWAQRMGMA GFQPMHLQVR RFDAFADPGL LALQLSMHGT  420
LRYWVAQDNT CFIIYANMTP MFSVTAWRPA TTTGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-27334484375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439698.10.0hypothetical protein SORBIDRAFT_09g018540
TrEMBLC5YX880.0C5YX88_SORBI; Putative uncharacterized protein Sb09g018540
STRINGSb09g018540.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-65scarecrow-like 3