PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G036400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 689aa    MW: 72100.8 Da    PI: 7.7043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G036400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.21.1e-16473519455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Sobic.009G036400.1.p 473 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 519
                           5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.61E-18466523No hitNo description
Gene3DG3DSA:4.10.280.104.5E-21466527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-20467529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.019469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-14473519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MTSFIRCSDL VKVNYPQTPA NKQLFTSWKQ AFCVVLLRIY IPKIPPGQAH ASPLPSPSRP  60
HLPSPPLLGN PSLARPEPER RRLLVVLGRG SCCYGGRCRV AFLNCSCSCS CPHLFSFLPS  120
ISLLLPLLSS LLRPSACVLH PPPPVAAPTA PAPLMTGPGD ELAELLWDHG PALRRPPPPF  180
QPFTCSAAGS SRSHELKRHP VPVPVPLGMH THGAGLGLGG LPVHDDEDDA VPWLHCPVVV  240
DDGDADTAPL PPEYCASLLS EYSEAAAPAA TASHAAAVVP AAPPPPEAAV ANKLAPPSAT  300
GSGVGEGVLN FTFFSRPLQR PQAASAAASH PVESTVVQAA TNRLRSTPLF SEQRMAWLQP  360
PKAPRATAAA AATPPPPPPP PPAPPQLAPM LPDTRHGETV AQPRSQPDAR PPDAAAVTAS  420
SVCSGNGDRS QLKRSCHLAA DCSVSPDEDM DDEPGATRRS AARSAKRSRT AEVHNMSERR  480
RRDRINEKMR ALQELIPNCN KIDKASMLEE AIEYLKTLQL QVQMMSMGTG LCMPPAAMLL  540
PAMHQHMQAL HHHHHHPMAH FPHLGMGLGY GMGMGMGATA AAGFDMLPRV AAGAHFPCPP  600
MAMPPPPGAA MFGVPGTGMA TLPAAFAHMA GAAPAGQMEA GAGDAAPAAA AAAAAAAPAR  660
PEEAEHPPVR GVAQGDQEAQ QQQHPKQT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477482ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439246.10.0hypothetical protein SORBIDRAFT_09g003090
SwissprotQ6AT908e-78APG_ORYSJ; Transcription factor APG
TrEMBLC5YZL90.0C5YZL9_SORBI; Putative uncharacterized protein Sb09g003090
STRINGSb09g003090.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-31phytochrome interacting factor 3