PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G024600.8.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 402aa    MW: 44375.1 Da    PI: 9.4325
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G024600.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-17115164155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sobic.009G024600.8.p 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                           78*******************......55************************997 PP

2AP241.53.2e-13208258155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Sobic.009G024600.8.p 208 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 258
                           89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-9115164IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-16115173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-17116173IPR001471AP2/ERF domain
SMARTSM003803.3E-32116178IPR001471AP2/ERF domain
CDDcd000189.62E-11116174No hitNo description
PROSITE profilePS5103217.794116172IPR001471AP2/ERF domain
PfamPF008479.7E-9208258IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-17208267IPR016177DNA-binding domain
CDDcd000185.69E-25208268No hitNo description
Gene3DG3DSA:3.30.730.108.0E-16209266IPR001471AP2/ERF domain
SMARTSM003801.8E-32209272IPR001471AP2/ERF domain
PROSITE profilePS5103215.527209266IPR001471AP2/ERF domain
PRINTSPR003673.7E-6210221IPR001471AP2/ERF domain
PRINTSPR003673.7E-6248268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
SDSDAAGADD DDDATPSPPP HHHQHHHHQH HHQQQLVTRE LFPAGTGPPL PSPQHWAELG  60
FFRADPPRPH QQQPDIRILP HPHQHPHATP PVAPPPPVQP QPAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEDDM  180
KQQMKSLSKE EFVHVLRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  240
SEVEAARAYD KAAIKCNGRE AVTNFEPSTY DGELLTEVST EVAEVDLNLS ISQPASQSPK  300
RDKSCLGLQL HHGSFEGSES KKTKSTSSRD LNRRPEGGAP SWAWKVTAAP PHTLPLPLFS  360
SSSSSAAASS GFSNTATTAA PSASLRFDAP PSSSSSHHHR R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.52570.0embryo| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G024600.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4020840.0JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303262.10.0floral homeotic protein APETALA 2 isoform X3
SwissprotB8AXC31e-145AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1Z5R0H40.0A0A1Z5R0H4_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.J23348.1.p1e-161(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-96related to AP2.7